1T28
High resolution structure of a picornaviral internal cis-acting replication element
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1.4 mM RNA U-15N,13C, 10 mM phosphate buffer (pH 6.8), 10 mM KCl, 0.02 mM EDTA, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.8 | ambient | 298 | ||
2 | 3D_13C-separated_NOESY | 1.4 mM RNA U-15N,13C, 10 mM phosphate buffer (pH 6.8), 10 mM KCl, 0.02 mM EDTA, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.8 | ambient | 298 | ||
3 | 15N, and 13C HSQC | 1.4 mM RNA U-15N,13C, 10 mM phosphate buffer (pH 6.8), 10 mM KCl, 0.02 mM EDTA, 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 600 |
2 | Varian | UNITYPLUS | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry, molecular dynamics, simulated annealing | Felix |
NMR Ensemble Information | |
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Conformer Selection Criteria | averaged structure |
Conformers Calculated Total Number | 18 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | Felix | 2000 | MSI |
2 | refinement | X-PLOR | 3.1 | Brunger, A.T., et al., |