1T1H
NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 15N_HSQC, HNCACB,CBCA(CO)NH, HNCO | 0.9 mM GSPEF-AtPUB14(249-321) U-15N,13C, 20 mM sodium phosphate, 0.15 M NaCl, 1 mM DTT, 10% D20 | 10% D20, 90% H20 | 20 mM sodium phosphate, 0.15M NaCl | 7.5 | ambient | 298 | |
2 | HN(CA)CO | 0.6 mM GSPEF-AtPUB14(249-321) U-15N,13C, 20 mM sodium phosphate, 0.15 M NaCl, 1 mM DTT, 10% D20 | 10% D20, 90% H20 | 20 mM sodium phosphate, 0.15M NaCl | 7.5 | ambient | 298 | |
3 | 3D_15N-separated TOCSY, 3D_15N-separated NOESY | 0.6 mM GSPEF-AtPUB14(249-321) U-15N, 20 mM sodium phosphate, 0.15 M NaCl, 1 mM DTT, 10% D20 | 10% D20, 90% H20 | 20 mM sodium phosphate, 0.15M NaCl | 7.5 | ambient | 298 | |
4 | 3D_13C-separated TOCSY | 0.4 mM GSPEF-AtPUB14(249-321) U-15N,13C, 20 mM sodium phosphate, 0.15 M NaCl, 1 mM DTT, 99.96% D20 | 99.96% D20, 0.04% H2O | 20 mM sodium phosphate, 0.15M NaCl | 7.5 | ambient | 298 | |
5 | 3D_13C-separated TOCSY, 3D_13C-separated NOESY | 0.5 mM GSPEF-AtPUB14(249-321) U-15N,13C, 20 mM sodium phosphate, 0.15 M NaCl, 1 mM DTT, 99.96% D20 | 99.96% D20, 0.04% H2O | 20 mM sodium phosphate, 0.15M NaCl | 7.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY INOVA | 750 |
2 | Varian | UNITY INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing | the structures are based on a total of 1083 NOE-derived distance constraints and 88 dihedral angle contraints | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with favorable non-bond energy, structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | ||
2 | data analysis | Pronto | 20020517 | |
3 | structure solution | CYANA | ||
4 | structure solution | X-PLOR | V3.840 | |
5 | refinement | CNS | 1.1 |