X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1modified microbatch4.627730% v/v 2-methyl-2,4-pentanediol, 0.1M sodium acetate, pH 4.6, modified microbatch, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2846.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.371α = 90
b = 54.371β = 90
c = 135.109γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVRigaku/MSC CMF15-50Cr82003-01-23MSINGLE WAVELENGTH
21100CCDMAR CCD 165 mm2003-03-20
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU2.2909
2SYNCHROTRONAPS BEAMLINE 22-ID0.97APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75098.80.3845.98.32295426.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7691.70.274.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSASTHROUGHOUT1.750.6421713117698.710.216790.215730.23635RANDOM30.473
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.31.3-2.59
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it5.197
r_dihedral_angle_1_deg5.113
r_scbond_it3.231
r_mcangle_it1.975
r_angle_refined_deg1.632
r_mcbond_it1.097
r_nbd_refined0.221
r_symmetry_vdw_refined0.213
r_symmetry_hbond_refined0.209
r_xyhbond_nbd_refined0.157
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it5.197
r_dihedral_angle_1_deg5.113
r_scbond_it3.231
r_mcangle_it1.975
r_angle_refined_deg1.632
r_mcbond_it1.097
r_nbd_refined0.221
r_symmetry_vdw_refined0.213
r_symmetry_hbond_refined0.209
r_xyhbond_nbd_refined0.157
r_metal_ion_refined0.143
r_chiral_restr0.119
r_bond_refined_d0.019
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1460
Nucleic Acid Atoms
Solvent Atoms154
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing