1S9L

NMR Solution Structure of a Parallel LNA Quadruplex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1.80 mM, 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3', 10 mM KH2PO4, 70 mM KCl, 0.2 mM EDTAH2O/D2O 9:17.0ambient300
22D NOESY1.80 mM, 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3', 10 mM KH2PO4, 70 mM KCl, 0.2 mM EDTAD2O7.0ambient300
32D TOCSY1.80 mM, 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3', 10 mM KH2PO4, 70 mM KCl, 0.2 mM EDTAD2O7.0ambient300
41H-31P 2D COSY1.80 mM, 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3', 10 mM KH2PO4, 70 mM KCl, 0.2 mM EDTAD2O7.0ambient300
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAMX500
2VarianINOVA750
3VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics292 (73 per strand) NOE-derived distance constraints, 48 hydrogen bonds constraints, 36 (9 per strand) dihedral angle restraints. The 20 structures with the lowest CYANA target functions were subjected energy minimization (with no angle constraints) using the conjugate gradient method and the CVFF force fieldUXNMR
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2D homonuclear techniques
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionUXNMR970101Bruker
2collectionVNMR6.1/CVarian
3processingFelix98Accelrys
4structure solutionCYANA1.0.6Guentert
5refinementDiscover98Accelrys