1RWU

Solution structure of conserved protein YbeD from E. coli


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY2mM YbeD U-15N; 50mM phosphate buffer; 300mM NaCl; 0.1mM sodium azide90% H2O/10% D2O300mM NaCl6.3ambient298
2HNHA2mM YbeD U-15N; 50mM phosphate buffer; 300mM NaCl; 0.1mM sodium azide90% H2O/10% D2O300mM NaCl6.3ambient298
32D NOESY2mM YbeD; 50mM phosphate buffer; 300mM NaCl; 0.1mM sodium azide90% H2O/10% D2O300mM NaCl6.3ambient298
42D NOESY2mM YbeD; 50mM phosphate buffer; 300mM NaCl; 0.1mM sodium azide100% D2O300mM NaCl6.3ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
simulated annealingThe structures are based on a total of 556 restraints, 393 are NOE-derived distance constraints, 131 TALOS-derived dihedral angle restraints, 32 distance restraints from hydrogen bonds.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number15
Representative Model1 (fewest violations)
Additional NMR Experimental Information
DetailsThis structure was determined using standard triple-resonance and homonuclear techniques.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.1Bruker Biospin
2processingXwinNMR2.1Bruker Biospin
3processingGifa4.31Delsuc
4data analysisXEASY1.3.13Wuthrich
5structure solutionCYANA1.0.6Guentert
6refinementXplor-NIH2.9.2Clore