1R57

NMR Solution Structure of a GCN5-like putative N-acetyltransferase from Staphylococcus aureus. Northeast Structural Genomics Consortium Target ZR31


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1 mM protein U-15N,13C; 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 95% H2O, 5% D2O95% H2O/5% D2O.1156.5ambient293
23D_15N-separated_NOESY1 mM protein U-15N,13C; 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 95% H2O, 5% D2O95% H2O/5% D2O.1156.5ambient293
3HNHA1 mM protein U-15N,13C; 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 95% H2O, 5% D2O95% H2O/5% D2O.1156.5ambient293
4HNHB0.4 mM protein U-15N,5%-13C; 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 95% H2O, 5% D2O95% H2O/5% D2O.1156.5ambient293
54D_13C-separated_NOESY1 mM protein U-15N,13C, 20 mM MES, 100 mM NaCl, 5 mM CaCl2, 0.02% NaN3; 100% D2O100% D2O.1156.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA750
NMR Refinement
MethodDetailsSoftware
automated generation of initial distance restraint set distance geometry simulated annealing final refinement in explicit solventBackbone and sidechain assignments were determined manually from triple-resonance NMR data. NOE distance restraints were derived automatically from peak-picked data with AutoStructure, then error-checked and corrected manually. The structure is based on 848 restraints: 710 meaningful distance restraints, 58 hydrogen bond restraints, and 80 dihedral angle restraints. There are 9.5 restraints per restrained residue. Phi dihedral restraints were derived from the HNHA experiment and TALOS. Psi dihedral restraints were derived from NOE ratios, secondary structure propensities evident in preliminary structures, alpha carbon chemical shifts, and TALOS. Residues 44-51 comprise a poorly-defined loop in this ensemble of structures. Residues 1-3 and 94-102 are unstructured termini.AutoStructure
NMR Ensemble Information
Conformer Selection Criteriastructures with fewest restraint violations and lowest energy
Conformers Calculated Total Number30
Conformers Submitted Total Number20
Representative Model1 (similarity to average, few violations, and low energy)
Additional NMR Experimental Information
Detailsamide proton exchange was measured by dissolving a lyophilized protonated sample in D2O
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisAutoStructure1.1Huang, Tejero, Montelione
2structure solutionCNS1.1Brunger, Schwieters, Kuszewski, Tjandra, Clore
3refinementCNS1.1Brunger
4processingFelix97MSI
5data analysisSparky3Goddard, Kneller
6data analysisTALOSCornilescu, Delaglio, Bax