1QLV

Pyrone synthase (PYS) from Gerbera hybrida


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.5277HANGING DROP AT 4C, 1:1 25 MG/ML PYS + XTAL CONDITION (1.5 M AMMONIUM SULFATE, 0.05 M SUCCINIC ACID, PH 5.5, 2 MM DTT)
Crystal Properties
Matthews coefficientSolvent content
2.1242.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.14α = 90
b = 82.14β = 90
c = 241.325γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray105IMAGE PLATEBRUKER NONIUS DIP 2030 IMAGE PLATEMIRRORS1999-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEMAC SCIENCE MULTI WAVELENGTH SRA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.141.0792.20.081616.548438

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTMODELISATION BASED ON PDB ENTRY 1BI52.11048438257287.50.1850.18080.2689RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
146561.94
RMS Deviations
KeyRefinement Restraint Deviation
s_similar_adp_cmpnt0.083
s_non_zero_chiral_vol0.042
s_zero_chiral_vol0.029
s_from_restr_planes0.0251
s_angle_d0.023
s_anti_bump_dis_restr0.023
s_bond_d0.006
s_similar_dist
s_rigid_bond_adp_cmpnt
s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5780
Nucleic Acid Atoms
Solvent Atoms775
Heterogen Atoms

Software

Software
Software NamePurpose
SHELXL-97refinement
DENZOdata reduction
SCALEPACKdata scaling
EPMRphasing