1NO8

SOLUTION STRUCTURE OF THE NUCLEAR FACTOR ALY RBD DOMAIN


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY0.5mM ALY77-182-15N; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
23D_13C-HMQC-NOESY0.5mM ALY77-182-15N, 13C; 20mM Tris-HCl-d8, 100mM NaCl; 100% D2O100% D2O100mM NaCl6.5ambient296
33D_15n/13C-NOESY-HSQC0.5mM ALY77-182-15N, 13C; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
4HNCA, HNCO, HN(CA)CB0.5mM ALY77-182-15N, 13C; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
5CBCA(CO)NH, C(CO)NH-TOCSY, HC(CO)NH-TOCSY0.5mM ALY77-182-15N, 13C; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
6HNHA0.5mM ALY77-182-15N; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
7HCCH-COSY, CCH-COSY, HCCH-TOCSY0.5mM ALY77-182-15N, 13C; 20mM Tris-HCl-d8, 100mM NaCl; 100% D2O100% D2O100mM NaCl6.5ambient296
8HNHB0.5mM ALY77-182-15N; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
92D TOCSY0.5mM ALY77-182-15N; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
103D_13C-separated_NOESY0.5mM ALY77-182-15N, 13C; 20mM Tris-HCl-d8, 100mM NaCl; 90% H2O, 10% D2O90% H2O/10% D2O100mM NaCl6.5ambient296
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerDRX800
3BrukerAMX500
NMR Refinement
MethodDetailsSoftware
simulated annealing torsion angle dynamics molecular dynamicsREFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. RESIDUES 77-104 ARE HIGHLY DISORDERED AND DO NOT PRESENT A DEFINED STRUCTURE IN SOLUTION. RESIDUES 77-104 ARE NOT INCLUDED IN THIS ENTRY.XwinNMR
NMR Ensemble Information
Conformer Selection CriteriaStructures with the lowest energy and lowest constraint energy
Conformers Calculated Total Number92
Conformers Submitted Total Number32
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using restraints derived from a combination of NOESY spectra and triple resonance spectra.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.1Bruker
2processingNMRPipe1.8, 2.1Delaglio, F., Grzesiek, S., Vuister, G.W., Guang, Z., Pfeifer, J. and Bax, A.
3processingNMRDraw1.8, 2.1Delaglio, F., Grzesiek, S., Vuister, G.W., Guang, Z., Pfeifer, J. and Bax, A.
4data analysisNMRView3Johnson, B.A. and Blevins, R.A.
5structure solutionDYANA1.5Gunter, P., Mumenthaler, C. and Wuthrich, K.
6refinementAmber6, 7Case, D.A., Pearlman, D.A., Caldwell, J.W., Cheatham III, T.E., Wang, J., Ross, W.S.,Simmerling, C., Darden, T., Merz, K.M., Stanton, R.V., Cheng, A., Vincent, J.J., Crowley, M., Tsui, V., Gohlke, H., Radmer, R., et al. and Kollman, P.A.