1N7T

ERBIN PDZ domain bound to a phage-derived peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY2 mM Erbin PDZ (15N) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride90% H2O, 10% D20250 mM6.51 atm298
2HNHA2 mM Erbin PDZ (15N) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride90% H2O, 10% D20250 mM6.51 atm298
33D HNHB2 mM Erbin PDZ (15N) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride90% H2O, 10% D20250 mM6.51 atm298
43D 15N-separated low mixing time TOCSY2 mM Erbin PDZ (15N) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride90% H2O, 10% D20250 mM6.51 atm298
52D-15N-filtered NOESY2 mM Erbin PDZ (15N) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride90% H2O, 10% D20250 mM6.51 atm298
63D_13C-separated_NOESY2 mM Erbin PDZ (15N,13C) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride100% D2O250 mM6.51 atm298
73D-13_filtered, 13C-edited NOESY2 mM Erbin PDZ (15N,13C) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride100% D2O250 mM6.51 atm298
82D-13C-filtered NOESY2 mM Erbin PDZ (15N,13C) + 2.2 mM peptide; 25 mM sodium phosphate pH 6.5; 50 mM sodium chloride100% D2O250 mM6.51 atm298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics, simulated annealingThe complex was determined using a total of 1717 NOE distance restraints (148 intra residue, 339 sequential, 328 medium range, 699 long-range and 203 intermolecular), 36 hydrogen bond restraints, 156 dihedral angle restraints (86 phi, 44 psi and 26 chi-1) and 82 15N residual dipolar coupling restraints. The best 20 conformers (of 100) had no distance violations greater than 0.12A and no dihedral angle violations greater than 3.0 degrees. RMSD from experimental distance restraints was 0.0055+/-0.0007. The mean backbone rmsd from the mean structure was 0.40+/- 0.05 A for N, Ca and C atoms of residues 10-100. 74% (25%) of residues were in the most favoured (allowed) region of phi/psi space; no residues were in the disallowed region.XwinNMR
NMR Ensemble Information
Conformer Selection Criterialeast violation of experimental restraints
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model2 (closest to the average)
Additional NMR Experimental Information
DetailsThe resonance assignments were determined using triple-resonance NMR spectroscopy.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR3.1bruker
2data analysisFelix98Accelrys
3refinementCNS2000.1Accelrys