1M0V

NMR STRUCTURE OF THE TYPE III SECRETORY DOMAIN OF YERSINIA YOPH COMPLEXED WITH THE SKAP-HOM PHOSPHO-PEPTIDE N-acetyl-DEpYDDPF-NH2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-resolved_NOESY0.6 mM YopHNT U-15N,13C complexed with 0.72 mM unlabeled peptide; 50mM phosphate buffer NA90% H2O/10% D2O50 mm phosphate6.5ambient298
23D_15N-resolved_NOESY0.6 mM YopHNT U-15N,13C complexed with 0.72 mM unlabeled peptide; 50mM phosphate buffer NA90% H2O/10% D2O50 mm phosphate6.5ambient298
33D HCCH0.6 mM YopHNT U-15N,13C complexed with 0.72 mM unlabeled peptide; 50mM phosphate buffer NA90% H2O/10% D2O50 mm phosphate6.5ambient298
43D 15N/13C filtered/edited noesy0.6 mM YopHNT U-15N,13C complexed with 0.72 mM unlabeled peptide; 50mM phosphate buffer NA90% H2O/10% D2O50 mm phosphate6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA800
2BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsthe structures are based on a total of 3472 restraints, 3222 are NOE-derived distance constraints, 152 dihedral angle restraints, 98 distance restraints from hydrogen bonds.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number360
Conformers Submitted Total Number20
Representative Model9 (best ramachandran plot)
Additional NMR Experimental Information
Details15N HSQC titrations
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe
2data analysisXEASY
3structure solutionCNS
4refinementARIA1.0Nilges, M. and O'Donoghue, S.I.