1L7L

Crystal structure of Pseudomonas aeruginosa lectin 1 determined by single wavelength anomalous scattering phasing method


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7298ammonium sulfate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.8267.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.259α = 90
b = 72.351β = 90
c = 133.886γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2001-09-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.55099.30.026617.1318303161916.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.51.5596.30.140.14104.23029

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSASTHROUGHOUT1.514.629435153597.310.192620.192250.2002RANDOM13.435
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.14-0.19-0.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.971
r_scangle_it3.352
r_scbond_it2.169
r_mcangle_it1.316
r_angle_refined_deg1.301
r_mcbond_it0.737
r_angle_other_deg0.722
r_symmetry_vdw_other0.327
r_nbd_other0.252
r_nbd_refined0.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.971
r_scangle_it3.352
r_scbond_it2.169
r_mcangle_it1.316
r_angle_refined_deg1.301
r_mcbond_it0.737
r_angle_other_deg0.722
r_symmetry_vdw_other0.327
r_nbd_other0.252
r_nbd_refined0.2
r_symmetry_vdw_refined0.152
r_symmetry_hbond_refined0.129
r_xyhbond_nbd_refined0.092
r_nbtor_other0.083
r_chiral_restr0.082
r_metal_ion_refined0.062
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_gen_planes_other0.004
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms897
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
SHELXmodel building
ISASmodel building
RESOLVEmodel building
CNSrefinement
SHELXphasing
ISASphasing
RESOLVEphasing
MAR345data collection