1D2L

NMR SOLUTION STRUCTURE OF COMPLEMENT-LIKE REPEAT CR3 FROM THE LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN (LRP). EVIDENCE FOR SPECIFIC BINDING TO THE RECEPTOR BINDING DOMAIN OF HUMAN ALPHA-2 MACROGLOBULIN


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-SEPARATED TOCSY2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O20 mM NA-D3-ACETATE, 10 mM CACL25.5AMBIENT298
23D_13C-SEPARATED TOCSY2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O20 mM NA-D3-ACETATE, 10 mM CACL25.5AMBIENT298
33D_15N-SEPARATED_NOESY2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O20 mM NA-D3-ACETATE, 10 mM CACL25.5AMBIENT298
43D_13C-SEPARATED_NOESY2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O20 mM NA-D3-ACETATE, 10 mM CACL25.5AMBIENT298
5HBHA(CO)NH2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O20 mM NA-D3-ACETATE, 10 mM CACL25.5AMBIENT298
6CBCA(CO)NH2 MM CR3 U-15N,13C 20 MM NA-D3-ACETATE PH 5.5 10 MM CACL 90% H2O, 10% D2O20 mM NA-D3-ACETATE, 10 mM CACL25.5AMBIENT298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
NMR Refinement
MethodDetailsSoftware
MOLECULAR DYNAMICS ENERGY MINIMIZATIONTHE STRUCTURES ARE BASED ON 602 NOE CONSTRAINTS, 9 DISTANCE CONSTRAINTS FOR THE CALCIUM BINDING SITE, 3 DISULFIDE BRIDGES, 10 HYDROGEN BONDS AND FIVE DIHEDRAL ANGLE CONSTRAINTS.SYBYL
NMR Ensemble Information
Conformer Selection CriteriaSTRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST ENERGY
Conformers Calculated Total Number40
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsTHE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. 20 STRUCTURES IN THE DEPOSITION WERE FITTED BY FITTING STRUCTURES 2-20 TO THE FIRST, USING PROFIT V1.8 (MCLACHLAN, A. D., 1982 ACTA. CRYST.A38, 871-3) AS IMPLEMENTED IN THE PROGRAM PROFIT (MARTIN, A. C. R.,HTTP:// WWW.BIOCHEM.UCL.AC.UK/~MARTIN/PROGRAMS/#PROFIT)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingSYBYL6.3TRIPOS INC.
2structure solutionDYANA1.5GUNTERT, P., MUMENTHALER, C., AND WUTHRICH, K. (1997) JMB 273, 283-98
3refinementAmber5.0CASE, D. A., ET AL. (1997) AMBER 5, UNIV. OF CALIFORNIA, SAN FRANCISCO, UNPUBLISHED
4structure solutionProFit1.8McLachlan, A. D. (1982 Acta. Cryst. A38, 871-3)