1A5E

SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 18 STRUCTURES


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1NMR EXPERIMENTS FOR THE ASSIGNMENTS AND STRUCTURE CALCULATIONS : HNCACBH2O AND D2OCA. 07.5NO293
2HNCAH2O AND D2OCA. 07.5NO293
3CBCA(CO)HNH2O AND D2OCA. 07.5NO293
4HN(CO)CAH2O AND D2OCA. 07.5NO293
5HCCH-TOCSYH2O AND D2OCA. 07.5NO293
6HNHAH2O AND D2OCA. 07.5NO293
73D 15N-EDITED NOESY AND TOCSYH2O AND D2OCA. 07.5NO293
82D NOESY AND TOCSYH2O AND D2OCA. 07.5NO293
93D 13C-EDITED NOESYH2O AND D2OCA. 07.5NO293
103D 15N/13C SIMULTANEOUSLY EDITED NOESYH2O AND D2OCA. 07.5NO293
114D 15N/13C-EDITED NOESYH2O AND D2OCA. 07.5NO293
124D 13C/13C-EDITED NOESY.H2O AND D2OCA. 07.5NO293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDMX600600
2BrukerDRX800800
NMR Refinement
MethodDetailsSoftware
simulated annealingTHE 18 STRUCTURES WERE SUPERIMPOSED IN ORDER TO HAVE BEST FITTING FOR THE BACKBONE ATOMS (N, CA, C) OF RESIDUES 14-134. THE EXPERIMENTAL RESTRAINTS ARE PRESENTED IN ENTRY 1INK.MR. RESIDUES 1-13 AND 135-156 ARE POORLY DEFINED BY THE EXPERIMENTAL DATA. THUS, NO MEANING SHOULD BE GIVEN TO THOSE RESIDUES' COORDINATES.X-PLOR
NMR Ensemble Information
Conformer Selection CriteriaCLOSEST TO MEAN STRUCTURE WHICH SHOWS GOOD AGREEMENT WITH THE CONSTRAINTS. NONE OF THE CONSTRAINTS SHOW NOE VIOLATION BIGGER THAN 0.5 A AND DIHEDRAL ANGLE VIOLATION BIGGER THAN 5 DEGREE.
Conformers Calculated Total Number90
Conformers Submitted Total Number18
Additional NMR Experimental Information
DetailsTHE SOLUTION STRUCTURE OF THE TUMOR SUPPRESSOR P16INK4A HAS BEEN DETERMINED BY MULTI-DIMENSIONAL HERERONUCLEAR NMR. THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER). THE CALCULATION IS BASED ON 1437 EXPERIMENTAL NMR RESTRAINTS (1370 DISTANCE AND 67 TORSION ANGLE RESTRAINTS).
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionX-PLOR
2refinementX-PLOR