8B5L

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth D]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
K [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-06-29)
M [auth J]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
O [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8093716 3002206 SCOP2B (2022-06-29)
R [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2022-06-29)
T [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-06-29)
BA [auth B]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
CA [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8107568 3000890 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-06-29)
KA [auth f]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
LA [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2022-06-29)
NA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8103328 3002203 SCOP2B (2022-06-29)
SA [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
VA [auth c]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
XA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-06-29)
F [auth e]SCOP2B SuperfamilyRibosomal protein L32e8102090 3000982 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth h]PF00831e8b5lh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
J [auth D]PF14204,PF17144e8b5lD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
K [auth V]PF00238e8b5lV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
L [auth E]PF01159,PF03868e8b5lE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
M [auth J]PF00281,PF00673e8b5lJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
N [auth q]PF03896e8b5lq1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF03896ECOD (1.6)
N [auth q]F_UNCLASSIFIEDe8b5lq2 A: extended segmentsX: Notch transmembrane helix (From Topology)H: Notch transmembrane helix (From Topology)T: Notch transmembrane helixF: F_UNCLASSIFIEDECOD (1.6)
O [auth k]PF01781e8b5lk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
P [auth b]PF01779e8b5lb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
Q [auth m]PF01020e8b5lm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
R [auth Z]PF00467,PF01777e8b5lZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
S [auth T]PF01157e8b5lT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
B [auth P]PF00237e8b5lP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
T [auth i]PF01158e8b5li1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
U [auth F]PF00327,PF08079e8b5lF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
V [auth n]PF05162e8b5ln1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
W [auth L]PF01294e8b5lL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
X [auth O]PF00572e8b5lO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
Z [auth C]PF00573e8b5lC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
Z [auth C]PF14374e8b5lC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
AA [auth Y]PF16906e8b5lY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
BA [auth B]PF00297e8b5lB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
CA [auth R]PF01280e8b5lR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
CA [auth R]PF01280e8b5lR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
C [auth d]PF01198e8b5ld1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
DA [auth X]PF00276,PF03939e8b5lX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
EA [auth p]PF01780e8b5lp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
FA [auth M]PF00467,PF01929e8b5lM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
GA [auth H]PF00347e8b5lH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
IA [auth r]PF01778e8b5lr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
JA [auth Q]PF17135e8b5lQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
KA [auth f]PF01247e8b5lf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
LA [auth a]PF00828e8b5la1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
MA [auth A]PF00181e8b5lA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
MA [auth A]PF03947e8b5lA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
NA [auth g]PF01199e8b5lg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
PA [auth u]PF00584e8b5lu1 A: extended segmentsX: Preprotein translocase SecE subunit (From Topology)H: Preprotein translocase SecE subunit (From Topology)T: Preprotein translocase SecE subunitF: PF00584ECOD (1.6)
QA [auth v]PF05753e8b5lv1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF05753ECOD (1.6)
RA [auth j]PF01907e8b5lj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
SA [auth N]PF00827e8b5lN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
TA [auth o]PF00935e8b5lo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
UA [auth s]PF00344,PF10559e8b5ls1 A: alpha complex topologyX: Preprotein translocase SecY subunit (From Topology)H: Preprotein translocase SecY subunit (From Topology)T: Preprotein translocase SecY subunitF: PF00344,PF10559ECOD (1.6)
VA [auth c]PF01248e8b5lc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
WA [auth W]PF01246e8b5lW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
E [auth G]PF01248e8b5lG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
XA [auth l]PF00832e8b5ll1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
YA [auth U]PF01776e8b5lU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
F [auth e]PF01655e8b5le1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
H [auth S]F_UNCLASSIFIEDe8b5lS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
H [auth S]PF01775e8b5lS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
IPF00252e8b5lI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
J [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
J [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
K [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
L [auth E]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
L [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
M [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
M [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
O [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
P [auth b]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
R [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
R [auth Z]PF00467KOW motif (KOW)KOW motif- Family
S [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
B [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
U [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
U [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
V [auth n]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
W [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
Z [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
Z [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
AA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
BA [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
CA [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
C [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
DA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
DA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
EA [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
FA [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
GA [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
IA [auth r]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
KA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
LA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
MA [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
MA [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
NA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
RA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
SA [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
TA [auth o]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
VA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
WA [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
E [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
XA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
F [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth h]60S ribosomal protein L35
J [auth D]Ribosomal_L18_c domain-containing protein
K [auth V]60S ribosomal protein L23
L [auth E]60S ribosomal protein L6
M [auth J]60S ribosomal protein L11
N [auth q]Translocon-associated protein subunit alpha- -
O [auth k]60S ribosomal protein L38
P [auth b]60S ribosomal protein L29
Q [auth m]Ubiquitin-60S ribosomal protein L40- -
R [auth Z]60S ribosomal protein L27
S [auth T]60S ribosomal protein L21
B [auth P]60S ribosomal protein L17
T [auth i]60S ribosomal protein L36
U [auth F]60S ribosomal protein L7
V [auth n]60S ribosomal protein L41
W [auth L]60S ribosomal protein L13
X [auth O]60S ribosomal protein L13a
Y [auth 8]5.8S rRNA---
Z [auth C]60S ribosomal protein L4
AA [auth Y]Ribosomal protein L26
BA [auth B]Ribosomal protein L3
CA [auth R]Ribosomal protein L19
C [auth d]60S ribosomal protein L31
DA [auth X]Ribosomal_L23eN domain-containing protein
EA [auth p]60S ribosomal protein L37a
FA [auth M]60S ribosomal protein L14
GA [auth H]60S ribosomal protein L9
HA [auth 7]5S rRNA---
IA [auth r]60S ribosomal protein L28
JA [auth Q]Ribosomal protein L18
KA [auth f]60S ribosomal protein L35a
LA [auth a]60S ribosomal protein L27a
MA [auth A]Ribosomal protein L8
D [auth 5]28S rRNA---
NA [auth g]60S ribosomal protein L34
OA [auth K]Translocon-associated protein subunit delta- -
PA [auth u]Protein transport protein Sec61 subunit gamma
QA [auth v]Translocon-associated protein subunit beta- -
RA [auth j]Ribosomal protein L37
SA [auth N]Ribosomal protein L15
TA [auth o]60S ribosomal protein L36a-like
UA [auth s]Protein transport protein Sec61 subunit alpha isoform 1
VA [auth c]60S ribosomal protein L30
WA [auth W]Ribosomal protein L24
E [auth G]60S ribosomal protein L7a
XA [auth l]60S ribosomal protein L39-like
YA [auth U]60S ribosomal protein L22
F [auth e]Ribosomal protein L32
G [auth t]Signal sequence receptor subunit 3-
H [auth S]60S ribosomal protein L18a
Ribosomal protein L10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
A [auth h]IPR001854Large ribosomal subunit protein uL29Family
A [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
A [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
J [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
J [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
K [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
K [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
K [auth V]IPR000218Large ribosomal subunit protein uL14Family
L [auth E]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
L [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
L [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
L [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth E]IPR000915Large ribosomal subunit protein eL6Family
M [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
M [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
M [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
M [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
M [auth J]IPR002132Large ribosomal subunit protein uL5Family
N [auth q]IPR005595Translocon-associated protein (TRAP), alpha subunitFamily
O [auth k]IPR002675Large ribosomal subunit protein eL38Family
O [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
P [auth b]IPR002673Large ribosomal subunit protein eL29Family
Q [auth m]IPR019956Ubiquitin domainDomain
Q [auth m]IPR019954Ubiquitin conserved siteConserved Site
Q [auth m]IPR001975Large ribosomal subunit protein eL40 domainDomain
Q [auth m]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
Q [auth m]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
Q [auth m]IPR000626Ubiquitin-like domainDomain
R [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
R [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Z]IPR001141Large ribosomal subunit protein eL27Family
R [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
R [auth Z]IPR005824KOWDomain
R [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
S [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth T]IPR001147Large ribosomal subunit protein eL21Family
S [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
B [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
B [auth P]IPR001063Large ribosomal subunit protein uL22Family
B [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
T [auth i]IPR000509Large ribosomal subunit protein eL36Family
T [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
U [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
U [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
U [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
U [auth F]IPR039699Large ribosomal subunit protein uL30Family
U [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
U [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
U [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
V [auth n]IPR007836Large ribosomal subunit protein eS32Family
W [auth L]IPR001380Large ribosomal subunit protein eL13Family
X [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
X [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
X [auth O]IPR005822Large ribosomal subunit protein uL13Family
X [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Z [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
Z [auth C]IPR002136Large ribosomal subunit protein uL4Family
Z [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
Z [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
Z [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
AA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth Y]IPR005824KOWDomain
AA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
BA [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
BA [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
BA [auth B]IPR000597Large ribosomal subunit protein uL3Family
CA [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
CA [auth R]IPR039547Large ribosomal subunit protein eL19Family
CA [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
CA [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
CA [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
CA [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
C [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
C [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
C [auth d]IPR000054Large ribosomal subunit protein eL31Family
DA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
DA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
DA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
DA [auth X]IPR019985Large ribosomal subunit protein uL23Family
DA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
DA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
EA [auth p]IPR002674Large ribosomal subunit protein eL43Family
EA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
FA [auth M]IPR039660Large ribosomal subunit protein eL14Family
FA [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
FA [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
FA [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
GA [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
GA [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
GA [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
IA [auth r]IPR029004Ribosomal eL28/Mak16Domain
IA [auth r]IPR002672Large ribosomal subunit protein eL28Family
JA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
JA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
KA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
KA [auth f]IPR001780Large ribosomal subunit protein eL33Family
KA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
LA [auth a]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
LA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
LA [auth a]IPR030878Large ribosomal subunit protein uL15Family
LA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
LA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
MA [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MA [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth A]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
MA [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
MA [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MA [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
MA [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
MA [auth A]IPR002171Large ribosomal subunit protein uL2Family
NA [auth g]IPR008195Large ribosomal subunit protein eL34Family
NA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
OA [auth K]IPR008855Translocon-associatedFamily
PA [auth u]IPR008158Protein translocase SEC61 complex, gamma subunitFamily
PA [auth u]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
PA [auth u]IPR023391Protein translocase SecE domain superfamilyHomologous Superfamily
QA [auth v]IPR008856Translocon-associated protein subunit betaFamily
RA [auth j]IPR001569Large ribosomal subunit protein eL37Family
RA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
RA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
SA [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
SA [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
SA [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
SA [auth N]IPR000439Large ribosomal subunit protein eL15Family
TA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth o]IPR000552Large ribosomal subunit protein eL42Family
UA [auth s]IPR002208SecY/SEC61-alpha familyFamily
UA [auth s]IPR030659SecY conserved siteConserved Site
UA [auth s]IPR019561Translocon Sec61/SecY, plug domainDomain
UA [auth s]IPR023201SecY domain superfamilyHomologous Superfamily
VA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
VA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
VA [auth c]IPR000231Large ribosomal subunit protein eL30Family
VA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
VA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
WA [auth W]IPR011017TRASH domainDomain
WA [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
WA [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
WA [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
E [auth G]IPR001921Large ribosomal subunit protein eL8Family
E [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
E [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
E [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
XA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
XA [auth l]IPR000077Large ribosomal subunit protein eL39Family
XA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
YA [auth U]IPR002671Large ribosomal subunit protein eL22Family
YA [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
F [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
F [auth e]IPR001515Large ribosomal subunit protein eL32Family
F [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
G [auth t]IPR009779Translocon-associated protein subunit gammaFamily
H [auth S]IPR028877Large ribosomal subunit protein eL20Family
H [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
H [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
Q [auth m]MLZ Parent Component: LYS

RESIDAA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085
Z [auth C]MLZ Parent Component: LYS

RESIDAA0076 , AA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
D [auth 5]1MA Parent Component: A

RESIDAA0076 , AA0076

D [auth 5]5MC Parent Component: C

RESIDAA0076 , AA0076

D [auth 5]7MG Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]A2M Parent Component: A

RESIDAA0076 , AA0076

D [auth 5]B8H Parent Component: U

RESIDAA0076 , AA0076

D [auth 5]B8K Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]BGH Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]E6G Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]E7G Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]I4U Parent Component: U

RESIDAA0076 , AA0076

D [auth 5]OMC Parent Component: C

RESIDAA0076 , AA0076

D [auth 5]OMG Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]OMU Parent Component: U

RESIDAA0076 , AA0076

D [auth 5]P4U Parent Component: U

RESIDAA0076 , AA0076

D [auth 5]P7G Parent Component: G

RESIDAA0076 , AA0076

D [auth 5]PSU Parent Component: U

RESIDAA0076 , AA0076

D [auth 5]UR3 Parent Component: U

RESIDAA0076 , AA0076