7V6W
Crystal structure of heterohexameric Sa2YoeB-Sa2YefM complex bound to 26bp-DNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | PF06769 | e7v6wF1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
E | PF06769 | e7v6wE1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
F [auth M] | PF06769 | e7v6wM1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
J [auth N] | PF06769 | e7v6wN1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
B | PF02604 | e7v6wB1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
C | PF02604 | e7v6wC1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
D [auth A] | PF02604 | e7v6wA1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
G [auth L] | PF02604 | e7v6wL1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
H [auth I] | PF02604 | e7v6wI1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
I [auth K] | PF02604 | e7v6wK1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
K [auth D] | PF02604 | e7v6wD1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
L [auth J] | PF02604 | e7v6wJ1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F], E, F [auth M], J [auth N] | PF06769 | YoeB-like toxin of bacterial type II toxin-antitoxin system (YoeB_toxin) | YoeB-like toxin of bacterial type II toxin-antitoxin system | YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in Pfam:PF02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as a ... | Domain |
PF02604 | Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox) | Antitoxin Phd_YefM, type II toxin-antitoxin system | Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth F], E, F [auth M], J [auth N] | IPR009614 | Toxin YoeB | Family |
A [auth F], E, F [auth M], J [auth N] | IPR035093 | Toxin-antitoxin system, RelE/ParE toxin domain superfamily | Homologous Superfamily |
IPR006442 | Type II toxin-antitoxin system, antitoxin Phd/YefM | Family | |
IPR036165 | YefM-like superfamily | Homologous Superfamily |