7OHV

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
J [auth G]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
W [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
TA [auth y]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
V [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
Y [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
Z [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
AA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
HA [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
JA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
MA [auth o]SCOP2B SuperfamilyRNA-binding domain RBD8061969 3000110 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
F [auth C]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
F [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
I [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
I [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth E]PF01159e7ohvE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
J [auth G]PF01248e7ohvG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
K [auth H]PF00347e7ohvH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
R [auth P]PF00237e7ohvP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
W [auth V]PF00238e7ohvV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
FA [auth f]PF01247e7ohvf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
TA [auth y]PF01912e7ohvy1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
M [auth K]F_UNCLASSIFIEDe7ohvK1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
M [auth K]PF00687e7ohvK2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
N [auth L]PF01294e7ohvL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
O [auth M]PF00467,PF01929e7ohvM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
P [auth N]PF00827e7ohvN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
Q [auth O]PF00572e7ohvO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
S [auth Q]PF17135e7ohvQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
T [auth R]PF01280e7ohvR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
T [auth R]PF01280e7ohvR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
U [auth S]F_UNCLASSIFIEDe7ohvS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
U [auth S]PF01775e7ohvS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
V [auth U]PF01776e7ohvU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
X [auth W]PF00466e7ohvW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
X [auth W]PF17777e7ohvW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
Y [auth X]PF00276,PF03939e7ohvX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
Z [auth Y]PF16906e7ohvY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
AA [auth Z]PF01777e7ohvZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
BA [auth a]PF00828e7ohva1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
DA [auth d]PF01198e7ohvd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
EA [auth e]PF01655e7ohve1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
GA [auth h]PF00831e7ohvh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
HA [auth i]PF01158e7ohvi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
IA [auth j]PF01907e7ohvj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
JA [auth k]PF01781e7ohvk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
D [auth A]PF04427e7ohvA1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: PF04427ECOD (1.6)
NA [auth p]PF00400e7ohvp1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
PA [auth t]PF00327e7ohvt1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
E [auth B]PF00297e7ohvB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
F [auth C]PF00573e7ohvC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth C]PF14374e7ohvC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
G [auth D]PF13959e7ohvD3 A: alpha duplicates or obligate multimersX: RNA helicase Hera dimerization domain (From Topology)H: RNA helicase Hera dimerization domain (From Topology)T: RNA helicase Hera dimerization domainF: PF13959ECOD (1.6)
G [auth D]PF00270e7ohvD2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00270ECOD (1.6)
G [auth D]PF00271e7ohvD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00271ECOD (1.6)
I [auth F]PF00327,PF08079e7ohvF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
J [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
K [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth J]PF05890Eukaryotic rRNA processing protein EBP2 (Ebp2)Eukaryotic rRNA processing protein EBP2- Family
R [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
W [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
FA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
QA [auth u]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
SA [auth w]PF07780Spb1 C-terminal domain (Spb1_C)Spb1 C-terminal domainThis domain is found at the C-terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example Swiss:P25582 [1]. This domain interacts with the meandering tail of Erb1 and its removal ...This domain is found at the C-terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example Swiss:P25582 [1]. This domain interacts with the meandering tail of Erb1 and its removal is required to form the pre-mature inter-subunit surface of the Arx1/Nog2 particle [1,2].
Domain
TA [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
M [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
N [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
O [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
O [auth M]PF00467KOW motif (KOW)KOW motif- Family
P [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
Q [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
S [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
T [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
U [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
V [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
X [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
X [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
Y [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
Y [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Z [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
Z [auth Y]PF00467KOW motif (KOW)KOW motif- Family
BA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
CA [auth b]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
CA [auth b]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
DA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
EA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
GA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
HA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
IA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
JA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
KA [auth m]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
LA [auth n]PF16589BRCT domain, a BRCA1 C-terminus domain (BRCT_2)BRCT domain, a BRCA1 C-terminus domain- Family
MA [auth o]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
D [auth A]PF04427Brix domain (Brix)Brix domain- Domain
NA [auth p]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
OA [auth r]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
PA [auth t]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
RA [auth v]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
E [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
F [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
F [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth D]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
G [auth D]PF13959Domain of unknown function (DUF4217) (DUF4217)Domain of unknown function (DUF4217)This short domain is found at the C-terminus of many helicase proteins.Domain
G [auth D]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
I [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
I [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth E]60S ribosomal protein L6-A
J [auth G]60S ribosomal protein L8-A
K [auth H]60S ribosomal protein L9-A
L [auth J]rRNA-processing protein EBP2
R [auth P]60S ribosomal protein L17-A
W [auth V]60S ribosomal protein L23-A
FA [auth f]60S ribosomal protein L33-A
QA [auth u]Ribosome biogenesis protein RLP24
SA [auth w]27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
TA [auth y]Eukaryotic translation initiation factor 6
A [auth 1]25S rRNA---
M [auth K]Proteasome-interacting protein CIC1
N [auth L]60S ribosomal protein L13-A
O [auth M]60S ribosomal protein L14-A
P [auth N]60S ribosomal protein L15-A
Q [auth O]60S ribosomal protein L16-A
S [auth Q]60S ribosomal protein L18-A
B [auth 2]5.8S rRNA---
T [auth R]60S ribosomal protein L19-A
U [auth S]60S ribosomal protein L20-A
V [auth U]60S ribosomal protein L22-A
X [auth W]Ribosome assembly factor MRT4
Y [auth X]60S ribosomal protein L25
Z [auth Y]60S ribosomal protein L26-A
AA [auth Z]60S ribosomal protein L27-A
BA [auth a]60S ribosomal protein L28
CA [auth b]Nucleolar GTP-binding protein 1
C [auth 6]ITS2---
DA [auth d]60S ribosomal protein L31-A
EA [auth e]60S ribosomal protein L32
GA [auth h]60S ribosomal protein L35-A
HA [auth i]60S ribosomal protein L36-A
IA [auth j]60S ribosomal protein L37-A
JA [auth k]60S ribosomal protein L38
KA [auth m]Ribosome biogenesis protein ERB1
LA [auth n]Pescadillo homolog
MA [auth o]Ribosome biogenesis protein 15
D [auth A]Ribosome biogenesis protein BRX1
NA [auth p]Ribosome biogenesis protein YTM1
OA [auth r]Ribosome biogenesis protein NSA2-
PA [auth t]Ribosome biogenesis protein RLP7
RA [auth v]Nucleolar protein 16-
E [auth B]60S ribosomal protein L3
F [auth C]60S ribosomal protein L4-A
G [auth D]ATP-dependent RNA helicase HAS1
I [auth F]60S ribosomal protein L7-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
H [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth E]IPR000915Large ribosomal subunit protein eL6Family
J [auth G]IPR001921Large ribosomal subunit protein eL8Family
J [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
J [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
J [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
J [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth J]IPR008610Eukaryotic rRNA processingFamily
R [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth P]IPR001063Large ribosomal subunit protein uL22Family
R [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
W [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
W [auth V]IPR000218Large ribosomal subunit protein uL14Family
W [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
FA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
FA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
FA [auth f]IPR001780Large ribosomal subunit protein eL33Family
FA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
QA [auth u]IPR011017TRASH domainDomain
QA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
QA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
SA [auth w]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
SA [auth w]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
SA [auth w]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
SA [auth w]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
SA [auth w]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
SA [auth w]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
TA [auth y]IPR002769Translation initiation factor IF6Family
M [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
M [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
N [auth L]IPR001380Large ribosomal subunit protein eL13Family
N [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
O [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth M]IPR039660Large ribosomal subunit protein eL14Family
O [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
O [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
O [auth M]IPR005824KOWDomain
P [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
P [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
P [auth N]IPR000439Large ribosomal subunit protein eL15Family
Q [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
Q [auth O]IPR005822Large ribosomal subunit protein uL13Family
Q [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Q [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
S [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
S [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
S [auth Q]IPR000039Large ribosomal subunit protein eL18Family
S [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
T [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
T [auth R]IPR039547Large ribosomal subunit protein eL19Family
T [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
T [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
T [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
T [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
U [auth S]IPR028877Large ribosomal subunit protein eL20Family
U [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
U [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
V [auth U]IPR002671Large ribosomal subunit protein eL22Family
V [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
X [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
X [auth W]IPR001790Large ribosomal subunit protein uL10Family
X [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
X [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
X [auth W]IPR033867Ribosome assembly factor Mrt4Family
Y [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Y [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
Y [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Y [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Y [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
Z [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Z [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth Y]IPR005824KOWDomain
Z [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
Z [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
AA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
AA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
AA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
BA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
BA [auth a]IPR030878Large ribosomal subunit protein uL15Family
BA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
BA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
CA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
CA [auth b]IPR012973NOG, C-terminalDomain
CA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
CA [auth b]IPR041623NOG1, N-terminal helical domainDomain
CA [auth b]IPR006073GTP binding domainDomain
CA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
DA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
DA [auth d]IPR000054Large ribosomal subunit protein eL31Family
EA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
EA [auth e]IPR001515Large ribosomal subunit protein eL32Family
EA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
GA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
GA [auth h]IPR001854Large ribosomal subunit protein uL29Family
GA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
GA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
HA [auth i]IPR000509Large ribosomal subunit protein eL36Family
HA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
IA [auth j]IPR001569Large ribosomal subunit protein eL37Family
IA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
IA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth k]IPR002675Large ribosomal subunit protein eL38Family
JA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
KA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
KA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth m]IPR028598WD repeat BOP1/Erb1Family
KA [auth m]IPR001680WD40 repeatRepeat
KA [auth m]IPR012953BOP1, N-terminal domainDomain
KA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
LA [auth n]IPR010613PescadilloFamily
LA [auth n]IPR001357BRCT domainDomain
LA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
MA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
MA [auth o]IPR000504RNA recognition motif domainDomain
MA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
MA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
D [auth A]IPR026532Ribosome biogenesis protein BRX1Family
D [auth A]IPR007109Brix domainDomain
NA [auth p]IPR019775WD40 repeat, conserved siteConserved Site
NA [auth p]IPR012972NLEDomain
NA [auth p]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
NA [auth p]IPR001680WD40 repeatRepeat
NA [auth p]IPR028599WD repeat WDR12/Ytm1Family
NA [auth p]IPR020472G-protein beta WD-40 repeatRepeat
NA [auth p]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
OA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
PA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
PA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
PA [auth t]IPR039699Large ribosomal subunit protein uL30Family
PA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
PA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
RA [auth v]IPR019002Ribosome biogenesis protein Nop16Family
E [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
E [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
F [auth C]IPR002136Large ribosomal subunit protein uL4Family
F [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
F [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
F [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
G [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
G [auth D]IPR011545DEAD/DEAH box helicase domainDomain
G [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth D]IPR001650Helicase, C-terminal domain-likeDomain
G [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
G [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
G [auth D]IPR025313Domain of unknown function DUF4217Domain
I [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
I [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
I [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
I [auth F]IPR039699Large ribosomal subunit protein uL30Family
I [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
I [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
I [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site