7OHQ

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053109 3000334 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052916 3002152 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052917 3001378 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyL30e-like8063962 3001739 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyRL5-like8073884 3001709 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8053159 3002162 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082481 3000210 SCOP2B (2022-06-29)
S [auth O]SCOP2B SuperfamilyRibosomal protein L138066053 3001134 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyRibosomal protein L228076708 3001078 SCOP2B (2022-06-29)
U [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095970 3001045 SCOP2B (2022-06-29)
V [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e)8077485 3000890 SCOP2B (2022-06-29)
Y [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053058 3002158 SCOP2B (2022-06-29)
Z [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8103364 3000433 SCOP2B (2022-06-29)
BA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095962 3000210 SCOP2B (2022-06-29)
CA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076760 3000334 SCOP2B (2022-06-29)
DA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053046 3000334 SCOP2B (2022-06-29)
GA [auth c]SCOP2B SuperfamilyL30e-like8039862 3001739 SCOP2B (2022-06-29)
JA [auth f]SCOP2B SuperfamilyTranslational proteins8087451 3000811 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like8053547 3002203 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053115 3002161 SCOP2B (2022-06-29)
NA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins8080044 3001320 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8053562 3002206 SCOP2B (2022-06-29)
PA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8078549 3001756 SCOP2B (2022-06-29)
SA [auth o]SCOP2B SuperfamilyRNA-binding domain RBD8061969 3000110 SCOP2B (2022-06-29)
TA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8103126 3001320 SCOP2B (2022-06-29)
ZA [auth v]SCOP2B SuperfamilyClass II aaRS ABD-related8092351 3000465 SCOP2B (2022-06-29)
ZA [auth v]SCOP2B SuperfamilyClass II aaRS ABD-related8092352 3000465 SCOP2B (2022-06-29)
AB [auth w]SCOP2B SuperfamilyRrs1-like8092359 3002595 SCOP2B (2022-06-29)
CB [auth y]SCOP2B SuperfamilyPentein8036230 3000640 SCOP2B (2022-06-29)
G [auth B]SCOP2B SuperfamilyTranslational proteins8078363 3000811 SCOP2B (2022-06-29)
H [auth C]SCOP2B SuperfamilyRibosomal protein L48052816 3001146 SCOP2B (2022-06-29)
H [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052815 3002143 SCOP2B (2022-06-29)
I [auth D]SCOP2B SuperfamilyTranslational machinery components8052875 3000571 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth E]PF01159e7ohqE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
K [auth F]PF00327,PF08079e7ohqF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
L [auth G]PF01248e7ohqG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
M [auth H]PF00347e7ohqH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
N [auth J]PF00281,PF00673e7ohqJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
O [auth K]F_UNCLASSIFIEDe7ohqK1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
O [auth K]PF00687e7ohqK2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
P [auth L]PF01294e7ohqL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
Q [auth M]PF00467,PF01929e7ohqM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
R [auth N]PF00827e7ohqN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
S [auth O]PF00572e7ohqO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
T [auth P]PF00237e7ohqP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
U [auth Q]PF17135e7ohqQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
V [auth R]PF01280e7ohqR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
V [auth R]PF01280e7ohqR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
W [auth S]F_UNCLASSIFIEDe7ohqS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
W [auth S]PF01775e7ohqS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
X [auth T]PF01157e7ohqT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
Y [auth U]PF01776e7ohqU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
Z [auth V]PF00238e7ohqV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
AA [auth W]PF00466e7ohqW2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
AA [auth W]PF17777e7ohqW1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
BA [auth X]PF00276,PF03939e7ohqX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
CA [auth Y]PF16906e7ohqY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
DA [auth Z]PF01777e7ohqZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
EA [auth a]PF00828e7ohqa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
GA [auth c]PF01248e7ohqc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
HA [auth d]PF01198e7ohqd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
IA [auth e]PF01655e7ohqe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
JA [auth f]PF01247e7ohqf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
KA [auth g]PF01199e7ohqg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
LA [auth h]PF00831e7ohqh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
MA [auth i]PF01158e7ohqi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
NA [auth j]PF01907e7ohqj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
OA [auth k]PF01781e7ohqk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
PA [auth l]PF00832e7ohql1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
TA [auth p]PF01780e7ohqp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
XA [auth t]PF00327e7ohqt1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
BB [auth x]PF00400e7ohqx1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
CB [auth y]PF01912e7ohqy1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
F [auth A]PF00181e7ohqA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
F [auth A]PF03947e7ohqA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
G [auth B]PF00297e7ohqB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
H [auth C]PF00573e7ohqC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
H [auth C]PF14374e7ohqC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
I [auth D]PF14204,PF17144e7ohqD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
K [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
K [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
L [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
M [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
N [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
N [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
O [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
P [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
Q [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Q [auth M]PF00467KOW motif (KOW)KOW motif- Family
R [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
S [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
T [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
U [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
V [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
W [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
X [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
Y [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Z [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
AA [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
AA [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
BA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
BA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
CA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
CA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
DA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
EA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
FA [auth b]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
FA [auth b]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
FA [auth b]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
GA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
HA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
IA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
JA [auth f]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
KA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
LA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
MA [auth i]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
D [auth 5]PF03879Cgr1 family (Cgr1)Cgr1 family- Coiled-coil
NA [auth j]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
OA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
PA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
QA [auth m]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
QA [auth m]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
RA [auth n]PF16589BRCT domain, a BRCA1 C-terminus domain (BRCT_2)BRCT domain, a BRCA1 C-terminus domain- Family
SA [auth o]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
TA [auth p]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
UA [auth q]PF07767Nop53 (60S ribosomal biogenesis) (Nop53)Nop53 (60S ribosomal biogenesis)- Family
VA [auth r]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
WA [auth s]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
XA [auth t]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
YA [auth u]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
ZA [auth v]PF04427Brix domain (Brix)Brix domain- Domain
AB [auth w]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
BB [auth x]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CB [auth y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
DB [auth z]PF10338Protein of unknown function (DUF2423) (DUF2423)Protein of unknown function (DUF2423)- Family
F [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
F [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
G [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
H [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
H [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
I [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
I [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]25S rRNA---
J [auth E]60S ribosomal protein L6-A
K [auth F]60S ribosomal protein L7-A
L [auth G]60S ribosomal protein L8-A
M [auth H]60S ribosomal protein L9-A
N [auth J]60S ribosomal protein L11-A
O [auth K]Proteasome-interacting protein CIC1
P [auth L]60S ribosomal protein L13-A
Q [auth M]60S ribosomal protein L14-A
R [auth N]60S ribosomal protein L15-A
S [auth O]60S ribosomal protein L16-A
B [auth 2]5.8S rRNA---
T [auth P]60S ribosomal protein L17-A
U [auth Q]60S ribosomal protein L18-A
V [auth R]60S ribosomal protein L19-A
W [auth S]60S ribosomal protein L20-A
X [auth T]60S ribosomal protein L21-A
Y [auth U]60S ribosomal protein L22-A
Z [auth V]60S ribosomal protein L23-A
AA [auth W]Ribosome assembly factor MRT4
BA [auth X]60S ribosomal protein L25
CA [auth Y]60S ribosomal protein L26-A
C [auth 3]5S rRNA---
DA [auth Z]60S ribosomal protein L27-A
EA [auth a]60S ribosomal protein L28
FA [auth b]Nucleolar GTP-binding protein 1
GA [auth c]60S ribosomal protein L30
HA [auth d]60S ribosomal protein L31-A
IA [auth e]60S ribosomal protein L32
JA [auth f]60S ribosomal protein L33-A
KA [auth g]60S ribosomal protein L34-A
LA [auth h]60S ribosomal protein L35-A
MA [auth i]60S ribosomal protein L36-A
D [auth 5]rRNA-processing protein CGR1-
NA [auth j]60S ribosomal protein L37-A
OA [auth k]60S ribosomal protein L38
PA [auth l]60S ribosomal protein L39
QA [auth m]Nucleolar GTP-binding protein 2
RA [auth n]Pescadillo homolog
SA [auth o]Ribosome biogenesis protein 15
TA [auth p]60S ribosomal protein L43-A
UA [auth q]Ribosome biogenesis protein NOP53
VA [auth r]Ribosome biogenesis protein NSA2-
WA [auth s]Nuclear GTP-binding protein NUG1
E [auth 6]ITS2---
XA [auth t]Ribosome biogenesis protein RLP7
YA [auth u]Ribosome biogenesis protein RLP24
ZA [auth v]Ribosome biogenesis protein RPF2
AB [auth w]Regulator of ribosome biosynthesis-
BB [auth x]Ribosome assembly protein 4-
CB [auth y]Eukaryotic translation initiation factor 6
DB [auth z]UPF0642 protein YBL028C- -
F [auth A]60S ribosomal protein L2-A
G [auth B]60S ribosomal protein L3
H [auth C]60S ribosomal protein L4-A
I [auth D]60S ribosomal protein L5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
J [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
J [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth E]IPR000915Large ribosomal subunit protein eL6Family
K [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
K [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
K [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
K [auth F]IPR039699Large ribosomal subunit protein uL30Family
K [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
K [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
K [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
L [auth G]IPR001921Large ribosomal subunit protein eL8Family
L [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
L [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
M [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
M [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
M [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
M [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
N [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
N [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
N [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
N [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
N [auth J]IPR002132Large ribosomal subunit protein uL5Family
O [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
O [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
P [auth L]IPR001380Large ribosomal subunit protein eL13Family
P [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
Q [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth M]IPR039660Large ribosomal subunit protein eL14Family
Q [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
Q [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
Q [auth M]IPR005824KOWDomain
R [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
R [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
R [auth N]IPR000439Large ribosomal subunit protein eL15Family
S [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
S [auth O]IPR005822Large ribosomal subunit protein uL13Family
S [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
S [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
T [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
T [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth P]IPR001063Large ribosomal subunit protein uL22Family
T [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
U [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
U [auth Q]IPR000039Large ribosomal subunit protein eL18Family
U [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
V [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
V [auth R]IPR039547Large ribosomal subunit protein eL19Family
V [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
V [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
V [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
W [auth S]IPR028877Large ribosomal subunit protein eL20Family
W [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
W [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
X [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
X [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
X [auth T]IPR001147Large ribosomal subunit protein eL21Family
X [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth U]IPR002671Large ribosomal subunit protein eL22Family
Y [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Z [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Z [auth V]IPR000218Large ribosomal subunit protein uL14Family
Z [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
AA [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
AA [auth W]IPR001790Large ribosomal subunit protein uL10Family
AA [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
AA [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
AA [auth W]IPR033867Ribosome assembly factor Mrt4Family
BA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
BA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
BA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
CA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth Y]IPR005824KOWDomain
CA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
CA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
DA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
DA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
DA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
DA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
EA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth a]IPR030878Large ribosomal subunit protein uL15Family
EA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth b]IPR024926Nucleolar GTP-binding protein 1Family
FA [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
FA [auth b]IPR012973NOG, C-terminalDomain
FA [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
FA [auth b]IPR041623NOG1, N-terminal helical domainDomain
FA [auth b]IPR006073GTP binding domainDomain
FA [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
GA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
GA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
HA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
HA [auth d]IPR000054Large ribosomal subunit protein eL31Family
IA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
IA [auth e]IPR001515Large ribosomal subunit protein eL32Family
IA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
JA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
JA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
JA [auth f]IPR001780Large ribosomal subunit protein eL33Family
JA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
KA [auth g]IPR008195Large ribosomal subunit protein eL34Family
KA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
LA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
LA [auth h]IPR001854Large ribosomal subunit protein uL29Family
LA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
LA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
MA [auth i]IPR000509Large ribosomal subunit protein eL36Family
MA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
D [auth 5]IPR005579Cgr1-likeFamily
NA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
NA [auth j]IPR001569Large ribosomal subunit protein eL37Family
NA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
NA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth k]IPR002675Large ribosomal subunit protein eL38Family
OA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
PA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
PA [auth l]IPR000077Large ribosomal subunit protein eL39Family
PA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
QA [auth m]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
QA [auth m]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
QA [auth m]IPR006073GTP binding domainDomain
QA [auth m]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
QA [auth m]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
QA [auth m]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
RA [auth n]IPR010613PescadilloFamily
RA [auth n]IPR001357BRCT domainDomain
RA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
SA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth o]IPR000504RNA recognition motif domainDomain
SA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
SA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
TA [auth p]IPR002674Large ribosomal subunit protein eL43Family
TA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
UA [auth q]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
VA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
VA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
WA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
WA [auth s]IPR006073GTP binding domainDomain
WA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
WA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
WA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
XA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
XA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
XA [auth t]IPR039699Large ribosomal subunit protein uL30Family
XA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
XA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
YA [auth u]IPR011017TRASH domainDomain
YA [auth u]IPR000988Large ribosomal subunit protein eL24-relatedFamily
YA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
ZA [auth v]IPR039770Ribosome biogenesis protein Rpf2Family
ZA [auth v]IPR007109Brix domainDomain
AB [auth w]IPR007023Ribosomal biogenesis regulatory proteinFamily
BB [auth x]IPR001680WD40 repeatRepeat
BB [auth x]IPR019775WD40 repeat, conserved siteConserved Site
BB [auth x]IPR012972NLEDomain
BB [auth x]IPR020472G-protein beta WD-40 repeatRepeat
BB [auth x]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BB [auth x]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CB [auth y]IPR002769Translation initiation factor IF6Family
DB [auth z]IPR019434Domain of unknown function DUF2423Domain
F [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
F [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
F [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
F [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
F [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
F [auth A]IPR002171Large ribosomal subunit protein uL2Family
G [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
G [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
G [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
G [auth B]IPR000597Large ribosomal subunit protein uL3Family
G [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
H [auth C]IPR002136Large ribosomal subunit protein uL4Family
H [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
H [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
H [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
I [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
I [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain