7O7Y

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth AB]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
E [auth AD]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
L [auth AZ]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097826 3001397 SCOP2B (2022-06-29)
Q [auth Ae]SCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-06-29)
T [auth Ah]SCOP2B Superfamily50S Ribosomal protein L14-like8053075 3000433 SCOP2B (2022-06-29)
V [auth Aj]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
W [auth Ak]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
W [auth Ak]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
X [auth Al]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
Y [auth Am]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
Y [auth Am]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
Z [auth An]SCOP2B SuperfamilyTranslational machinery components8097824 3000571 SCOP2B (2022-06-29)
BA [auth Ap]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
DA [auth Ar]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
FA [auth At]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
HA [auth Av]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
QA [auth BB]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
RA [auth BC]SCOP2B SuperfamilyRibosomal protein L48052829 3001146 SCOP2B (2022-06-29)
RA [auth BC]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052828 3002143 SCOP2B (2022-06-29)
SA [auth BD]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
XA [auth BI]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)
YA [auth BJ]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
CB [auth BN]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
KB [auth BV]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-06-29)
NB [auth BY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-06-29)
PB [auth Ba]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2022-06-29)
RB [auth Bc]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
TB [auth Be]SCOP2B SuperfamilyRibosomal protein L32e8102090 3000982 SCOP2B (2022-06-29)
UB [auth Bf]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
VB [auth Bg]SCOP2B SuperfamilyRibosomal protein L34e-like8103328 3002203 SCOP2B (2022-06-29)
XB [auth Bi]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-06-29)
ZB [auth Bk]SCOP2B SuperfamilyRibosomal L38e protein-like8093716 3002206 SCOP2B (2022-06-29)
AC [auth Bl]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-06-29)
HC [auth Bv]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065344 3001911 SCOP2B (2022-06-29)
M [auth Aa]SCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
KA [auth Ay]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
EB [auth BP]SCOP2B SuperfamilyRibosomal protein L228097828 3001078 SCOP2B (2022-06-29)
MB [auth BX]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-06-29)
OB [auth BZ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2022-06-29)
G [auth AF]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
H [auth AG]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
DC [auth Bp]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth AA]Ribosomal_S27ee7o7yAA1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
C [auth AB]Ribosomal_S28ee7o7yAB1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
D [auth AC]Ribosomal_S27e7o7yAC1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
E [auth AD]Ribosomal_S30e7o7yAD1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
F [auth AE]Ribosomal_S26ee7o7yAE1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
L [auth AZ]Ribosomal_S2_2e7o7yAZ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
N [auth Ab]Ribosomal_S5_C_1e7o7yAb3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
N [auth Ab]Ribosomal_S5_3e7o7yAb2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
N [auth Ab]Ribosomal_S5_2e7o7yAb1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
O [auth Ac]Ribosomal_S3_Ce7o7yAc2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
O [auth Ac]KH_2_3e7o7yAc1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
P [auth Ad]Ribosomal_S4ee7o7yAd2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
P [auth Ad]40S_S4_Ce7o7yAd3 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
P [auth Ad]RS4NTe7o7yAd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
Q [auth Ae]Ribosomal_S7_1e7o7yAe1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
R [auth Af]Ribosomal_S6ee7o7yAf1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
S [auth Ag]Ribosomal_S7e_Ne7o7yAg2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
S [auth Ag]Ribosomal_S7e_C_1e7o7yAg1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
T [auth Ah]Ribosomal_S8ee7o7yAh1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
U [auth Ai]S4e7o7yAi1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
V [auth Aj]S10_plectine7o7yAj1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
W [auth Ak]Ribosomal_S17_1e7o7yAk1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
X [auth Al]Ribosomal_L7Aee7o7yAl1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
Y [auth Am]Ribosomal_S13_Ne7o7yAm2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
Y [auth Am]Ribosomal_S15_2e7o7yAm1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
Z [auth An]Ribosomal_S11e7o7yAn1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
AA [auth Ao]Ribosomal_S19e7o7yAo1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
BA [auth Ap]Ribosomal_S9e7o7yAp1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
CA [auth Aq]Ribosomal_S17ee7o7yAq1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
DA [auth Ar]Ribosomal_S13e7o7yAr1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
EA [auth As]Ribosomal_S19ee7o7yAs1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
FA [auth At]Ribosomal_S10_1e7o7yAt1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
GA [auth Au]Ribosomal_S21ee7o7yAu1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
HA [auth Av]Ribosomal_S8_N_1e7o7yAv1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
HA [auth Av]Ribosomal_S8_C_1e7o7yAv2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
IA [auth Aw]Ribosom_S12_S23e7o7yAw1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
LA [auth Az]Ribosomal_L41e7o7yAz1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
PA [auth BA]Ribosomal_L2_1e7o7yBA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
PA [auth BA]Ribosomal_L2_C_2e7o7yBA2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
QA [auth BB]Ribosomal_L3e7o7yBB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
RA [auth BC]Ribosomal_L4e7o7yBC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
RA [auth BC]Ribos_L4_asso_Ce7o7yBC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
SA [auth BD]Ribosomal_L5ee7o7yBD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
TA [auth BE]Ribosomal_L6ee7o7yBE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
UA [auth BF]Ribosomal_L30_1e7o7yBF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
VA [auth BG]Ribosomal_L7Ae_1e7o7yBG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
XA [auth BI]Ribosomal_L16e7o7yBI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
YA [auth BJ]Ribosomal_L5_Ce7o7yBJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
BB [auth BM]Ribosomal_L14ee7o7yBM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
CB [auth BN]Ribosomal_L15ee7o7yBN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
DB [auth BO]Ribosomal_L13e7o7yBO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
FB [auth BQ]Ribosomal_L18e7o7yBQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
GB [auth BR]Ribosomal_L19e_Ne7o7yBR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
GB [auth BR]Ribosomal_L19e_Ce7o7yBR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
HB [auth BS]Ribosomal_L18Ae7o7yBS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
JB [auth BU]Ribosomal_L22ee7o7yBU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
KB [auth BV]Ribosomal_L14e7o7yBV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
LB [auth BW]Ribosomal_L24ee7o7yBW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
NB [auth BY]Ribosomal_L26e7o7yBY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
PB [auth Ba]Ribosomal_L18e7o7yBa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
QB [auth Bb]Ribosomal_L29ee7o7yBb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
RB [auth Bc]Ribosomal_L7Aee7o7yBc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
SB [auth Bd]Ribosomal_L31ee7o7yBd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
TB [auth Be]Ribosomal_L32ee7o7yBe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
UB [auth Bf]Ribosomal_L35Aee7o7yBf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
VB [auth Bg]Ribosomal_L34ee7o7yBg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
WB [auth Bh]Ribosomal_L29_2e7o7yBh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
XB [auth Bi]Ribosomal_L36ee7o7yBi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
YB [auth Bj]Ribosomal_L37ee7o7yBj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
ZB [auth Bk]Ribosomal_L38ee7o7yBk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
AC [auth Bl]Ribosomal_L39e7o7yBl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
BC [auth Bm]Ribosomal_L40ee7o7yBm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
CC [auth Bo]Ribosomal_L44e7o7yBo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
EC [auth Br]Ribosomal_L28ee7o7yBr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
GC [auth Bt]Ribosomal_L11e7o7yBt1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
GC [auth Bt]Ribosomal_L11_Ne7o7yBt2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
HC [auth Bv]Ribosomal_L1_2nd_1e7o7yBv1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
HC [auth Bv]Ribosomal_L1_1st_1e7o7yBv2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
M [auth Aa]Ribosomal_S3Ae_Ne7o7yAa2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
M [auth Aa]Ribosomal_S3Ae_Ce7o7yAa1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
JA [auth Ax]Ribosomal_S24ee7o7yAx1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
KA [auth Ay]Ribosomal_S25e7o7yAy1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
WA [auth BH]Ribosomal_L6_2e7o7yBH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
WA [auth BH]Ribosomal_L6e7o7yBH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
AB [auth BL]Ribosomal_L13ee7o7yBL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
EB [auth BP]Ribosomal_L22e7o7yBP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
IB [auth BT]Ribosomal_L21ee7o7yBT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
MB [auth BX]Ribosomal_L23_3e7o7yBX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
OB [auth BZ]Ribosomal_L27ee7o7yBZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
G [auth AF]DUF1899e7o7yAF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
H [auth AG]Ribosomal_S14_2e7o7yAG1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
DC [auth Bp]Ribosomal_L37aee7o7yBp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
FC [auth Bs]Ribosomal_L10e7o7yBs2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
FC [auth Bs]Ribosomal_P0_L10ee7o7yBs1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth AA]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
C [auth AB]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
D [auth AC]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
E [auth AD]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
L [auth AZ]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
L [auth AZ]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
O [auth Ac]PF07650KH domain (KH_2)KH domain- Domain
O [auth Ac]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
Q [auth Ae]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
R [auth Af]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
S [auth Ag]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
T [auth Ah]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
U [auth Ai]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
U [auth Ai]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
V [auth Aj]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
W [auth Ak]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
W [auth Ak]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
X [auth Al]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Y [auth Am]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
Y [auth Am]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
Z [auth An]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
AA [auth Ao]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
BA [auth Ap]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
CA [auth Aq]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
DA [auth Ar]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
FA [auth At]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
HA [auth Av]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
IA [auth Aw]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
LA [auth Az]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
QA [auth BB]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
RA [auth BC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
RA [auth BC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
SA [auth BD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
SA [auth BD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
TA [auth BE]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
TA [auth BE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
XA [auth BI]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
YA [auth BJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
YA [auth BJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
BB [auth BM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
CB [auth BN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
GB [auth BR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
KB [auth BV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
LB [auth BW]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
NB [auth BY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
NB [auth BY]PF00467KOW motif (KOW)KOW motif- Family
PB [auth Ba]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
QB [auth Bb]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
RB [auth Bc]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
SB [auth Bd]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
TB [auth Be]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
UB [auth Bf]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
VB [auth Bg]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
WB [auth Bh]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
XB [auth Bi]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
YB [auth Bj]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
ZB [auth Bk]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
AC [auth Bl]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
CC [auth Bo]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
GC [auth Bt]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
GC [auth Bt]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
HC [auth Bv]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
JA [auth Ax]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
KA [auth Ay]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
WA [auth BH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
ZA [auth BK]PF09401Coronavirus RNA synthesis protein NSP10 (CoV_NSP10)Coronavirus RNA synthesis protein NSP10- Family
EB [auth BP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
IB [auth BT]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
MB [auth BX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
MB [auth BX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
OB [auth BZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
OB [auth BZ]PF00467KOW motif (KOW)KOW motif- Family
G [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H [auth AG]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
DC [auth Bp]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
FC [auth Bs]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
FC [auth Bs]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth AA]40S ribosomal protein S27- - -
C [auth AB]Ribosomal protein S28- - -
D [auth AC]Ribosomal protein S27a- - -
E [auth AD]40S ribosomal protein S30- - -
F [auth AE]Ribosomal protein eS26---
I [auth AH]mRNA containing SARS-CoV-2 sequence---
L [auth AZ]40S ribosomal protein SA- - -
N [auth Ab]Ribosomal protein uS5---
O [auth Ac]40S ribosomal protein S3- - -
P [auth Ad]Ribosomal protein eS4---
Q [auth Ae]Ribosomal protein S5- - -
R [auth Af]40S ribosomal protein S6- - -
S [auth Ag]40S ribosomal protein S7- - -
T [auth Ah]40S ribosomal protein S8- - -
U [auth Ai]Ribosomal protein S9 (Predicted)- - -
V [auth Aj]eS10- - -
W [auth Ak]40S ribosomal protein S11- - -
X [auth Al]40S ribosomal protein S12- - -
Y [auth Am]uS15- - -
Z [auth An]40S ribosomal protein uS11- - -
AA [auth Ao]40S ribosomal protein uS19- - -
BA [auth Ap]uS9- - -
CA [auth Aq]40S ribosomal protein eS17- - -
DA [auth Ar]40S ribosomal protein S18- - -
EA [auth As]Ribosomal protein eS19---
FA [auth At]40S ribosomal protein uS10- - -
GA [auth Au]Ribosomal protein eS21---
HA [auth Av]Ribosomal protein S15a- - -
IA [auth Aw]40S ribosomal protein S23- - -
LA [auth Az]60s ribosomal protein l41- - -
NA [auth B7]5S rRNA---
OA [auth B8]5.8S rRNA---
PA [auth BA]Ribosomal protein uL2---
QA [auth BB]Ribosomal protein L3- - -
RA [auth BC]60S ribosomal protein L4- - -
SA [auth BD]Ribosomal_L18_c domain-containing protein---
TA [auth BE]60S ribosomal protein L6- - -
UA [auth BF]Ribosomal Protein uL30---
VA [auth BG]Ribosomal protein eL8---
XA [auth BI]60S ribosomal protein L10- - -
YA [auth BJ]Ribosomal protein L11- - -
BB [auth BM]Ribosomal protein L14- - -
CB [auth BN]Ribosomal protein L15- - -
DB [auth BO]Ribosomal protein uL13---
FB [auth BQ]Ribosomal Protein eL18---
GB [auth BR]60S ribosomal protein L19
HB [auth BS]Ribosomal protein eL20---
JB [auth BU]Ribosomal protein eL22---
KB [auth BV]Ribosomal protein L23- - -
LB [auth BW]eL24- - -
NB [auth BY]Ribosomal protein L26- - -
PB [auth Ba]60S ribosomal protein L27a- - -
QB [auth Bb]60S ribosomal protein L29- - -
RB [auth Bc]eL30- - -
SB [auth Bd]eL31- - -
TB [auth Be]eL32- - -
UB [auth Bf]eL33- - -
VB [auth Bg]60S ribosomal protein L34- - -
WB [auth Bh]uL29- - -
XB [auth Bi]60S ribosomal protein L36- - -
YB [auth Bj]Ribosomal protein L37- - -
ZB [auth Bk]eL38- - -
AC [auth Bl]eL39
BC [auth Bm]60S ribosomal protein L40---
CC [auth Bo]eL42- - -
EC [auth Br]Ribosomal protein eL28---
GC [auth Bt]Ribosomal protein L12- - -
HC [auth Bv]Ribosomal protein uL1- - -
A [auth A2]18S rRNA---
J [auth AI]E-site tRNA---
K [auth AT]P-site Phe-tRNA(Phe)---
M [auth Aa]40S ribosomal protein S3a- - -
JA [auth Ax]40S ribosomal protein S24
KA [auth Ay]40S ribosomal protein S25- - -
MA [auth B5]28S rRNA---
WA [auth BH]60S ribosomal protein L9- - -
ZA [auth BK]Replicase polyprotein 1ab
AB [auth BL]Ribosomal protein eL13---
EB [auth BP]uL22---
IB [auth BT]eL21- - -
MB [auth BX]uL23- - -
OB [auth BZ]60S ribosomal protein L27- - -
G [auth AF]RACK1- - -
H [auth AG]uS14- - -
DC [auth Bp]eL43- - -
FC [auth Bs]60S acidic ribosomal protein P0- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
V [auth Aj]IPR037447Small ribosomal subunit protein eS10Family
V [auth Aj]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth Aj]IPR005326Plectin/eS10, N-terminalDomain
GB [auth BR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
GB [auth BR]IPR039547Large ribosomal subunit protein eL19Family
GB [auth BR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
GB [auth BR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
GB [auth BR]IPR000196Large ribosomal subunit protein eL19 domainDomain
GB [auth BR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
AC [auth Bl]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
AC [auth Bl]IPR000077Large ribosomal subunit protein eL39Family
AC [auth Bl]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
JA [auth Ax]IPR001976Small ribosomal subunit protein eS24Family
JA [auth Ax]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
JA [auth Ax]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
ZA [auth BK]IPR022733DPUP/SUD, C-terminal, betacoronavirusDomain
ZA [auth BK]IPR042515Non-structural protein NSP15, N-terminal domain superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR043174Non-structural protein NSP15, middle domain superfamilyHomologous Superfamily
ZA [auth BK]IPR044315Nonstructural protein 14, betacoronavirusDomain
ZA [auth BK]IPR038123Non-structural protein NSP4, C-terminal superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR042570Non-structural protein NSP3, nucleic acid-binding domain superfamily, betacoronavirusHomologous Superfamily
ZA [auth BK]IPR043178Papain-like protease, thumb domain superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR046441RNA-dependent RNA polymerase, coronavirusDomain
ZA [auth BK]IPR044863Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domainDomain
ZA [auth BK]IPR044343Nonstructural protein 13, 1B domain, coronavirusDomain
ZA [auth BK]IPR038166Polyprotein cleavage domain PL2pro superfamily, betacoronavirusHomologous Superfamily
ZA [auth BK]IPR037227Endoribonuclease EndoU-likeHomologous Superfamily
ZA [auth BK]IPR027352Nonstructural protein 13, zinc-binding domain, coronavirus-likeDomain
ZA [auth BK]IPR009003Peptidase S1, PA clanHomologous Superfamily
ZA [auth BK]IPR013016Peptidase C16, coronavirusDomain
ZA [auth BK]IPR009466Non-structural protein 14, coronavirusDomain
ZA [auth BK]IPR044357NSP3, first ubiquitin-like (Ubl) domain, coronavirusDomain
ZA [auth BK]IPR046436Nidovirus 3'-5' exoribonuclease domainDomain
ZA [auth BK]IPR047570NSP12, interface domain, coronavirusDomain
ZA [auth BK]IPR018995RNA synthesis protein NSP10, coronavirusDomain
ZA [auth BK]IPR043615Nonstructural protein 2, N-terminal domain, coronavirusDomain
ZA [auth BK]IPR043177Papain-like protease, N-terminal domain superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR043606Coronavirus replicase NSP15, N-terminal oligomerizationDomain
ZA [auth BK]IPR044330Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirusDomain
ZA [auth BK]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
ZA [auth BK]IPR024375Non-structural protein NSP3, SUD-M domain, betacoronavirusDomain
ZA [auth BK]IPR014828Non-structural protein NSP7, coronavirusDomain
ZA [auth BK]IPR043503Papain-like viral protease, palm and finger domains, coronavirusHomologous Superfamily
ZA [auth BK]IPR014829Non-structural protein NSP8, coronavirusDomain
ZA [auth BK]IPR036499Non-structural protein NSP9 superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
ZA [auth BK]IPR044389Non-structural protein 2, SARS-CoV-likeDomain
ZA [auth BK]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
ZA [auth BK]IPR008740Peptidase C30, coronavirusDomain
ZA [auth BK]IPR036333RNA synthesis protein NSP10 superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR047573Non-structural protein 2, middle domain, coronavirusDomain
ZA [auth BK]IPR043472Macro domain-likeHomologous Superfamily
ZA [auth BK]IPR043609NendoU domain, nidovirusDomain
ZA [auth BK]IPR032592Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirusDomain
ZA [auth BK]IPR043613Non-structural protein 2, C-terminal domain, coronavirusDomain
ZA [auth BK]IPR038083Non-structural protein NSP3A domain-like superfamilyHomologous Superfamily
ZA [auth BK]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
ZA [auth BK]IPR044351RNA-dependent RNA polymerase, SARS-CoV-likeDomain
ZA [auth BK]IPR024358Non-structural protein NSP3, N-terminal, betacoronavirusDomain
ZA [auth BK]IPR048673Nonstructural protein 13, stalk domain, coronavirusDomain
ZA [auth BK]IPR046435NSP14, guanine-N7-methyltransferase domain, coronavirusDomain
ZA [auth BK]IPR009469RNA-dependent RNA polymerase, N-terminal, coronavirusDomain
ZA [auth BK]IPR043611Coronavirus replicase NSP3, C-terminalDomain
ZA [auth BK]IPR044864Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirusDomain
ZA [auth BK]IPR047566Coronavirus replicase NSP3, Y domainDomain
ZA [auth BK]IPR048672Nonstructural protein 13, zinc-binding domain, coronavirusDomain
ZA [auth BK]IPR043612Non-structural protein NSP4, N-terminal, coronavirusDomain
ZA [auth BK]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
ZA [auth BK]IPR043608Nonstructural protein 15, middle domain, coronavirusDomain
ZA [auth BK]IPR044353NSP3, second ubiquitin-like (Ubl) domain, coronavirusDomain
ZA [auth BK]IPR037204Non-structural protein NSP7 superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR046443NSP1, globular domain, alpha/betacoronavirusDomain
ZA [auth BK]IPR043610Non-structural protein 6, coronavirusDomain
ZA [auth BK]IPR027351(+) RNA virus helicase core domainDomain
ZA [auth BK]IPR044322Nonstructural protein 15, middle domain, alpha/betacoronavirusDomain
ZA [auth BK]IPR009461Non-structural protein NSP16, coronavirus-likeDomain
ZA [auth BK]IPR043477Peptidase C30, domain 3, coronavirusHomologous Superfamily
ZA [auth BK]IPR043478Non-structural protein NSP3, SUD-N (Mac2) domain superfamily, betacoronavirusHomologous Superfamily
ZA [auth BK]IPR038400Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirusHomologous Superfamily
ZA [auth BK]IPR046442NSP1, C-terminal domain, betacoronavirusDomain
ZA [auth BK]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
ZA [auth BK]IPR044401NSP15, NendoU domain, coronavirusDomain
ZA [auth BK]IPR014822Non-structural protein NSP9, coronavirusDomain
ZA [auth BK]IPR038030NSP1 globular domain superfamily, betacoronavirusHomologous Superfamily
ZA [auth BK]IPR021590NSP1, globular domain, betacoronavirusDomain
ZA [auth BK]IPR044367Non-structural protein 6, betacoronavirusDomain
ZA [auth BK]IPR037230Non-structural protein NSP8 superfamily, coronavirusHomologous Superfamily
ZA [auth BK]IPR046440Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domainDomain
ZA [auth BK]IPR032505Non-structural protein NSP4, C-terminal, coronavirusDomain
ZA [auth BK]IPR046438Nidovirus 2-O-methyltransferaseDomain
ZA [auth BK]IPR002589Macro domainDomain
ZA [auth BK]IPR047567Non-structural protein NSP3, group 2-specific marker domain, betacoronavirusDomain
ZA [auth BK]IPR044371Non-structural protein 3, X-domain-likeDomain
ZA [auth BK]IPR007094RNA-directed RNA polymerase, catalytic domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
L [auth AZ]SAC Parent Component: SER

DA [auth Ar]SAC Parent Component: SER

EA [auth As]NMM Parent Component: ARG

GA [auth Au]AME Parent Component: MET

IA [auth Aw]HY3 Parent Component: PRO

RESIDAA0029

PSI-MOD :  3-hydroxy-L-proline MOD:00038
NA [auth B7]GTP Parent Component: G

RESIDAA0029

OA [auth B8]OMG Parent Component: G

RESIDAA0029

OA [auth B8]PSU Parent Component: U

RESIDAA0029

PA [auth BA]V5N Parent Component: HIS

RESIDAA0029

QA [auth BB]HIC Parent Component: HIS

RESIDAA0029 , AA0317

PSI-MOD :  3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322
RA [auth BC]AYA Parent Component: ALA

RESIDAA0029 , AA0317

SA [auth BD]AAC RESIDAA0029 , AA0317

PB [auth Ba]V5N Parent Component: HIS

RESIDAA0029 , AA0317

QB [auth Bb]MLZ Parent Component: LYS

RESIDAA0029 , AA0317 , AA0076

PSI-MOD :  3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085
BC [auth Bm]M3L Parent Component: LYS

RESIDAA0029 , AA0317 , AA0076 , AA0074

PSI-MOD :  3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083
CC [auth Bo]MLZ Parent Component: LYS

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

PSI-MOD :  3-hydroxy-L-proline MOD:00038 , 1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , N6-methyl-L-lysine MOD:00085
EC [auth Br]SAC Parent Component: SER

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]4AC RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]6MZ Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]7MG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]A2M Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]B8N RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]MA6 Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]OMC Parent Component: C

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]OMG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]OMU Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

A [auth A2]PSU Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]1MA Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]2MG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]5MC Parent Component: C

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]5MU Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]7MG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]H2U Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]M2G Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]OMC Parent Component: C

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]OMG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]PSU Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

K [auth AT]YYG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]1MA Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]5MC Parent Component: C

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]6MZ Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]A2M Parent Component: A

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]OMC Parent Component: C

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]OMG Parent Component: G

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]OMU Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]PSU Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]UR3 Parent Component: U

RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076

MA [auth B5]UY1 RESIDAA0029 , AA0317 , AA0076 , AA0074 , AA0076