7NWU
Co-crystal structure of UPF3B-RRM-NOPS-L with UPF2-MIF4GIII
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RNA-binding domain RBD | 8035186 | 3000110 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RNA-binding domain RBD | 8035186 | 3000110 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RNA-binding domain RBD | 8035186 | 3000110 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RNA-binding domain RBD | 8035186 | 3000110 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ARM repeat-like | 8035191 | 3000116 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF03467 | e7nwuC1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF03467 | ECOD (1.6) |
E | PF03467 | e7nwuE1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF03467 | ECOD (1.6) |
B | PF02854 | e7nwuB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
D | PF02854 | e7nwuD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
F | PF02854 | e7nwuF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
H | PF02854 | e7nwuH1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF02854 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR034979 | UPF3B, RNA recognition motif-like domain | Domain | |
IPR039722 | Nonsense-mediated mRNA decay protein 3 | Family | |
IPR005120 | UPF3 domain | Domain | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR039762 | Nonsense-mediated mRNA decay protein Nmd2/UPF2 | Family | |
IPR007193 | Up-frameshift suppressor 2, C-terminal | Domain | |
IPR003890 | MIF4G-like, type 3 | Domain |