7NQA
Crystal structure of Nucleoporin-98 nanobody MS98-6 complex solved at 2.2A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth D] | d7nqad_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Alpaca, Lama pacos (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
D [auth C] | d7nqac_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Alpaca, Lama pacos (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ZU5 domain-like | 8102799 | 3002026 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | ZU5 domain-like | 8102799 | 3002026 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04096 | e7nqaA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology) | T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | F: PF04096 | ECOD (1.6) |
C [auth B] | PF04096 | e7nqaB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related (From Topology) | T: ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | F: PF04096 | ECOD (1.6) |
B [auth D] | PF07686 | e7nqaD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D [auth C] | PF07686 | e7nqaC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth D], D [auth C] | Heavy Chain | IGHV1 | - | nuclear pore complex protein nup96 | SAbDab (2024-05-31) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF04096 | Nucleoporin autopeptidase (Nucleoporin2) | Nucleoporin autopeptidase | - | Family |