7K00
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
K | SCOP2 Family | Ribosomal protein L18p and S11 | 8100803 | 4000555 | SCOP2 (2022-06-29) |
K | SCOP2 Superfamily | Translational machinery components | 8100804 | 3000571 | SCOP2 (2022-06-29) |
L | SCOP2 Family | Cold shock DNA-binding domain-like | 8097931 | 4001909 | SCOP2 (2022-06-29) |
L | SCOP2 Superfamily | Nucleic acid-binding proteins | 8097932 | 3000135 | SCOP2 (2022-06-29) |
P | SCOP2B Superfamily | Ribosomal protein S16 | 8097318 | 3000680 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | Ribosomal protein S21 | 8093436 | 3002159 | SCOP2B (2022-06-29) |
X [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
X [auth c] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
FA [auth k] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8096018 | 3001045 | SCOP2B (2022-06-29) |
GA [auth l] | SCOP2 Family | Ribosomal protein L16p | 8098041 | 4003717 | SCOP2 (2022-06-29) |
GA [auth l] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8098042 | 3000884 | SCOP2 (2022-06-29) |
PA [auth u] | SCOP2B Superfamily | Ribosomal protein L25-like | 8093520 | 3001161 | SCOP2B (2022-06-29) |
QA [auth v] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
YA [auth 3] | SCOP2B Superfamily | Ribosomal protein L36 | 8093434 | 3001346 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J | Ribosomal_S10 | e7k00J1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
K | Ribosomal_S11 | e7k00K1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
L | Ribosom_S12_S23 | e7k00L1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
M | Ribosomal_S13_1 | e7k00M1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_1 | ECOD (1.6) |
N | Ribosomal_S14_1 | e7k00N1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_1 | ECOD (1.6) |
O | Ribosomal_S15_1 | e7k00O1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
P | Ribosomal_S16 | e7k00P1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16 | ECOD (1.6) |
Q | Ribosomal_S17_1 | e7k00Q1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
R | Ribosomal_S18 | e7k00R1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
S | Ribosomal_S19 | e7k00S1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
B | Ribosomal_S2 | e7k00B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
T | Ribosomal_S20p | e7k00T1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: Ribosomal_S20p | ECOD (1.6) |
U | Ribosomal_S21 | e7k00U1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: Ribosomal_S21 | ECOD (1.6) |
X [auth c] | Ribosomal_L2_1 | e7k00c1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
X [auth c] | Ribosomal_L2_C | e7k00c2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C | ECOD (1.6) |
Y [auth d] | Ribosomal_L3 | e7k00d1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
Z [auth e] | Ribosomal_L4 | e7k00e1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
AA [auth f] | Ribosomal_L5_C | e7k00f1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
BA [auth g] | Ribosomal_L6 | e7k00g1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
BA [auth g] | Ribosomal_L6_1 | e7k00g2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
CA [auth h] | Ribosomal_L9_N | e7k00h1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: Ribosomal_L9_N | ECOD (1.6) |
C | Ribosomal_S3_C | e7k00C2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
C | KH_2_1 | e7k00C1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_1 | ECOD (1.6) |
DA [auth i] | Ribosomal_L13 | e7k00i1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
EA [auth j] | Ribosomal_L14 | e7k00j1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
FA [auth k] | Ribosomal_L27A | e7k00k1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
GA [auth l] | Ribosomal_L16 | e7k00l1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
HA [auth m] | Ribosomal_L17_1 | e7k00m1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
IA [auth n] | Ribosomal_L18p | e7k00n1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
JA [auth o] | Ribosomal_L19 | e7k00o1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
KA [auth p] | Ribosomal_L20 | e7k00p1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
LA [auth q] | Ribosomal_L21p | e7k00q1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
MA [auth r] | Ribosomal_L22 | e7k00r1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
D | S4 | e7k00D1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
NA [auth s] | Ribosomal_L23_2 | e7k00s1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
OA [auth t] | ribosomal_L24_1 | e7k00t1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
PA [auth u] | Ribosomal_L25p | e7k00u1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
QA [auth v] | Ribosomal_L27 | e7k00v1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
RA [auth w] | Ribosomal_L28 | e7k00w1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
SA [auth x] | Ribosomal_L29 | e7k00x1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
TA [auth y] | Ribosomal_L30 | e7k00y1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
UA [auth z] | Ribosomal_L32p | e7k00z1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
VA [auth 0] | Ribosomal_L33 | e7k0001 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
WA [auth 1] | Ribosomal_L34 | e7k0011 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
E | Ribosomal_S5_C | e7k00E1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C | ECOD (1.6) |
E | Ribosomal_S5 | e7k00E2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5 | ECOD (1.6) |
XA [auth 2] | Ribosomal_L35p | e7k0021 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
YA [auth 3] | Ribosomal_L36 | e7k0031 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
ZA [auth 4] | Ribosomal_L31 | e7k0041 | A: few secondary structure elements | X: Ribosomal protein L31p (From Topology) | H: Ribosomal protein L31p (From Topology) | T: Ribosomal protein L31p | F: Ribosomal_L31 | ECOD (1.6) |
F | Ribosomal_S6 | e7k00F1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6 | ECOD (1.6) |
G | Ribosomal_S7_1 | e7k00G1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
H | Ribosomal_S8_N | e7k00H1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N | ECOD (1.6) |
H | Ribosomal_S8_C | e7k00H2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C | ECOD (1.6) |
I | Ribosomal_S9 | e7k00I1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
2MG | Parent Component: G | |
4OC | Parent Component: C | |
5MC | Parent Component: C | |
G7M | Parent Component: G | |
MA6 | Parent Component: A | |
PSU | Parent Component: U | |
UR3 | Parent Component: U | |
IAS | ||
D2T | Parent Component: ASP | |
V [auth a] | 1MG | Parent Component: G |
V [auth a] | 2MA | Parent Component: A |
V [auth a] | 2MG | Parent Component: G |
V [auth a] | 3TD | Parent Component: U |
V [auth a] | 5MC | Parent Component: C |
V [auth a] | 5MU | Parent Component: U |
V [auth a] | 6MZ | Parent Component: A |
V [auth a] | G7M | Parent Component: G |
V [auth a] | H2U | Parent Component: U |
V [auth a] | OMC | Parent Component: C |
V [auth a] | OMG | Parent Component: G |
V [auth a] | OMU | Parent Component: U |
V [auth a] | PSU | Parent Component: U |
Y [auth d] | MEQ | Parent Component: GLN :  AA0071 :  N5-methyl-L-glutamine MOD:00080 |
GA [auth l] | 4D4 | Parent Component: ARG :  AA0071 |
GA [auth l] | MS6 | AA0071 | :