7ELL

In situ structure of capping enzyme lambda2, penetration protein mu1 of mammalian reovirus capsid asymmetric unit.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
R [auth i]SCOP2 FamilyReovirus mu1 protein-like8105400 4007739 SCOP2 (2022-06-29)
R [auth i]SCOP2 SuperfamilyReovirus mu1 protein-like8105401 3002506 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF05993e7ellA1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
C [auth B]PF05993e7ellB1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
E [auth C]PF05993e7ellC1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
G [auth D]PF05993e7ellD1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
I [auth E]PF05993e7ellE1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
K [auth F]PF05993e7ellF1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
M [auth G]PF05993e7ellG1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
O [auth H]PF05993e7ellH1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
Q [auth I]PF05993e7ellI1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
S [auth J]PF05993e7ellJ1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
B [auth a]PF05993e7ella3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
B [auth a]PF05993e7ella2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
B [auth a]PF05993e7ella1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
D [auth b]PF05993e7ellb3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
D [auth b]PF05993e7ellb2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
D [auth b]PF05993e7ellb1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
F [auth c]PF05993e7ellc3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
F [auth c]PF05993e7ellc2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
F [auth c]PF05993e7ellc1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
H [auth d]PF05993e7elld3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
H [auth d]PF05993e7elld2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
H [auth d]PF05993e7elld1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
J [auth e]PF05993e7elle3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
J [auth e]PF05993e7elle2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
J [auth e]PF05993e7elle1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
L [auth f]PF05993e7ellf3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
L [auth f]PF05993e7ellf2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
L [auth f]PF05993e7ellf1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
N [auth g]PF05993e7ellg3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
N [auth g]PF05993e7ellg2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
N [auth g]PF05993e7ellg1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
P [auth h]PF05993e7ellh3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
P [auth h]PF05993e7ellh2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
P [auth h]PF05993e7ellh1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
R [auth i]PF05993e7elli3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
R [auth i]PF05993e7elli2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
R [auth i]PF05993e7elli1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
T [auth j]PF05993e7ellj3 A: beta sandwichesX: jelly-rollH: Jelly-roll domain in membrane penetration protein mu1 (From Topology)T: Jelly-roll domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
T [auth j]PF05993e7ellj2 A: alpha arraysX: Alpha-helical domain in membrane penetration protein mu1 (From Topology)H: Alpha-helical domain in membrane penetration protein mu1 (From Topology)T: Alpha-helical domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
T [auth j]PF05993e7ellj1 A: a+b complex topologyX: a+b domain in membrane penetration protein mu1 (From Topology)H: a+b domain in membrane penetration protein mu1 (From Topology)T: a+b domain in membrane penetration protein mu1F: PF05993ECOD (1.6)
U [auth K]PF06016e7ellK8 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF06016ECOD (1.6)
U [auth K]PF21060e7ellK7 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF21060ECOD (1.6)
U [auth K]PF21061e7ellK5 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF21061ECOD (1.6)
U [auth K]PF21062e7ellK6 A: a+b two layersX: ferredoxin-like domain in VP1 (From Topology)H: ferredoxin-like domain in VP1 (From Topology)T: ferredoxin-like domain in VP1F: PF21062ECOD (1.6)
U [auth K]PF21063e7ellK2 A: a+b three layersX: HIT-likeH: HIT-related (From Topology)T: HIT-relatedF: PF21063ECOD (1.6)
U [auth K]PF21064e7ellK4 A: a+b complex topologyX: Rotavirus NSP2 fragment, N-terminal domain (From Topology)H: Rotavirus NSP2 fragment, N-terminal domain (From Topology)T: Rotavirus NSP2 fragment, N-terminal domainF: PF21064ECOD (1.6)
U [auth K]PF21065e7ellK1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF21065ECOD (1.6)
U [auth K]PF21066e7ellK3 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF21066ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05993Reovirus major virion structural protein Mu-1/Mu-1C (M2) (Reovirus_M2)Reovirus major virion structural protein Mu-1/Mu-1C (M2)- Family
PF05993Reovirus major virion structural protein Mu-1/Mu-1C (M2) (Reovirus_M2)Reovirus major virion structural protein Mu-1/Mu-1C (M2)- Family
U [auth K]PF21064Reovirus core-spike protein lambda-2 (L2), N-terminal (Reovirus_L2_N)Reovirus core-spike protein lambda-2 (L2), N-terminalReovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top [2]. This entry represents the N-terminal domain which adopts an alpha/beta topology.
Domain
U [auth K]PF21063Reovirus core-spike protein lambda-2 (L2), GTase domain (Reovirus_L2_GTase)Reovirus core-spike protein lambda-2 (L2), GTase domainReovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the second one, which contains the nucleotide-binding histidine triad (HIT)-like motif from the GTase (guanylyltransferase) domain [2].
Domain
U [auth K]PF21066Reovirus core-spike protein lambda-2 (L2), methyltransferase-2 (Reovirus_L2_MT2)Reovirus core-spike protein lambda-2 (L2), methyltransferase-2Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the second methyltransferase domain (MT2), which catalyses the last reaction, 2'O-methylation [2].
Domain
U [auth K]PF21065Reovirus core-spike protein lambda-2 (L2), methyltransferase-1 (Reovirus_L2_MT1)Reovirus core-spike protein lambda-2 (L2), methyltransferase-1Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the methyltransferase-1 domain [2] which adds a methyl group to the N7 of the guanosine added by the GTase [2].
Domain
U [auth K]PF21060Reovirus core-spike protein lambda-2 (L2), 6th domain (Reovirus_L2_6th)Reovirus core-spike protein lambda-2 (L2), 6th domainReovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the sixth domain which, together with the seventh and eighth (Pfam:PF06016) domains forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like fold, resembling the V of an antibody light chain [2].
Domain
U [auth K]PF21062Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domain (Reovirus_L2_4th)Reovirus core-spike protein lambda-2 (L2), ferredoxin-like domainReovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the fourth domain, which adopts a ferredoxin-like fold consisting of four beta-strands protected by alpha-helices that probably functions as a structural support for the three enzyme domains (two methyltransferase and GTase domains) [2].
Domain
U [auth K]PF06016Reovirus core-spike protein lambda-2 (L2), C-terminal (Reovirus_L2_8th)Reovirus core-spike protein lambda-2 (L2), C-terminalReovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the C-terminal (eighth) domain which, together with the sixth and seventh domains, forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like, resembling a truncated V region of an antibody light chain.
Domain
U [auth K]PF21061Reovirus core-spike protein lambda-2 (L2), 7th domain (Reovirus_L2_7th)Reovirus core-spike protein lambda-2 (L2), 7th domainReovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight dom ...Reovirus core-spike protein VP1/lambda-2 (VP1/L2) forms a pentamer that mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [1]. It forms a hollow cylinder with projecting turrets. Each VP1/L2 monomer consists of eight domains with the most N-terminal domain at the base of the turret and the most C-terminal domain at the top. This entry represents the seventh domain which, together with the sixth (Pfam:PF21060) and eighth (Pfam:PF06016) domains forms a three-domain flap at the top of the turret, that may serve as a gate to retard exit of the 5' terminus of the mRNA [2]. This domain has a Ig-like fold, resembling the C region of an antibody light chain [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Mu1
Mu1
U [auth K]mRNA (guanine-N(7)-)-methyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR015961Mu1 membrane penetration protein, domain IHomologous Superfamily
IPR015960Mu1 membrane penetration protein, domain IVHomologous Superfamily
IPR036256Mu1/VP4 superfamilyHomologous Superfamily
IPR009113Outer capsid protein Mu1/VP4Family
IPR015962Mu1 membrane penetration protein, domain IIHomologous Superfamily
IPR044937Mu1 membrane penetration protein, domain IIIHomologous Superfamily
IPR015961Mu1 membrane penetration protein, domain IHomologous Superfamily
IPR015960Mu1 membrane penetration protein, domain IVHomologous Superfamily
IPR036256Mu1/VP4 superfamilyHomologous Superfamily
IPR009113Outer capsid protein Mu1/VP4Family
IPR015962Mu1 membrane penetration protein, domain IIHomologous Superfamily
IPR044937Mu1 membrane penetration protein, domain IIIHomologous Superfamily
U [auth K]IPR048601Reovirus core-spike protein lambda-2-like, GTase domainDomain
U [auth K]IPR048602Reovirus core-spike protein lambda-2-like, 7th domainDomain
U [auth K]IPR048604Reovirus core-spike protein lambda-2-like, ferredoxin-like domainDomain
U [auth K]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
U [auth K]IPR048598Reovirus core-spike protein lambda-2-like, first methyltransferase domainDomain
U [auth K]IPR048596Reovirus core-spike protein lambda-2-like, N-terminal domainDomain
U [auth K]IPR013783Immunoglobulin-like foldHomologous Superfamily
U [auth K]IPR048603Reovirus core-spike protein lambda-2-like, 6th domainDomain
U [auth K]IPR010311Reovirus core-spike lambda-2Family
U [auth K]IPR048597Reovirus core-spike protein lambda-2-like, second methyltransferase domainDomain
U [auth K]IPR048294Reovirus core-spike protein lambda-2-like, C-terminal domainDomain