7E44
Crystal structure of NudC complexed with dpCoA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | NADH pyrophosphatase intervening domain | 8042153 | 3001752 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nudix | 8036012 | 3000098 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nudix | 8042152 | 3000098 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Nudix | 8036012 | 3000098 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Nudix | 8042152 | 3000098 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | NADH pyrophosphatase intervening domain | 8042153 | 3001752 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nudix | 8036012 | 3000098 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | NADH pyrophosphatase intervening domain | 8042153 | 3001752 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nudix | 8042152 | 3000098 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | NADH pyrophosphatase intervening domain | 8042153 | 3001752 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Nudix | 8036012 | 3000098 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Nudix | 8042152 | 3000098 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e7e44A2 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00293 | e7e44A1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
A | PF09297 | e7e44A3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF09297 | ECOD (1.6) |
D [auth F] | F_UNCLASSIFIED | e7e44F2 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth F] | PF00293 | e7e44F1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
D [auth F] | PF09297 | e7e44F3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF09297 | ECOD (1.6) |
B | F_UNCLASSIFIED | e7e44B2 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00293 | e7e44B1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
B | PF09297 | e7e44B3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF09297 | ECOD (1.6) |
C [auth E] | F_UNCLASSIFIED | e7e44E2 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth E] | PF00293 | e7e44E1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
C [auth E] | PF09297 | e7e44E3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF09297 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth E], D [auth F] | PF09297 | NADH pyrophosphatase zinc ribbon domain (zf-NADH-PPase) | NADH pyrophosphatase zinc ribbon domain | This domain is found in between two duplicated NUDIX domains. It has a zinc ribbon structure. | Domain |
A, B, C [auth E], D [auth F] | PF00293 | NUDIX domain (NUDIX) | NUDIX domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B, C [auth E], D [auth F] | IPR022925 | NAD-capped RNA hydrolase NudC | Family |
A, B, C [auth E], D [auth F] | IPR049734 | NADH pyrophosphatase-like, Nudix hydrolase C-terminal domain | Domain |
A, B, C [auth E], D [auth F] | IPR000086 | NUDIX hydrolase domain | Domain |
A, B, C [auth E], D [auth F] | IPR015376 | Zinc ribbon, NADH pyrophosphatase | Domain |
A, B, C [auth E], D [auth F] | IPR015797 | NUDIX hydrolase-like domain superfamily | Homologous Superfamily |
A, B, C [auth E], D [auth F] | IPR020084 | NUDIX hydrolase, conserved site | Conserved Site |