7DEG
Cryo-EM structure of a heme-copper terminal oxidase dimer provides insights into its catalytic mechanism
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00115 | e7degA1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: PF00115 | ECOD (1.6) |
D | PF00115 | e7degD1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: PF00115 | ECOD (1.6) |
B [auth C] | F_UNCLASSIFIED | e7degC1 | A: extended segments | X: Bacterial ba3 type cytochrome c oxidase subunit IIa (From Topology) | H: Bacterial ba3 type cytochrome c oxidase subunit IIa (From Topology) | T: Bacterial ba3 type cytochrome c oxidase subunit IIa | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | F_UNCLASSIFIED | e7degF1 | A: extended segments | X: Bacterial ba3 type cytochrome c oxidase subunit IIa (From Topology) | H: Bacterial ba3 type cytochrome c oxidase subunit IIa (From Topology) | T: Bacterial ba3 type cytochrome c oxidase subunit IIa | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth B] | PF00116 | e7degB1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: PF00116 | ECOD (1.6) |
F [auth E] | PF00116 | e7degE1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: PF00116 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00115 | Cytochrome C and Quinol oxidase polypeptide I (COX1) | Cytochrome C and Quinol oxidase polypeptide I | - | Family | |
C [auth B], F [auth E] | PF00116 | Cytochrome C oxidase subunit II, periplasmic domain (COX2) | Cytochrome C oxidase subunit II, periplasmic domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036927 | Cytochrome c oxidase-like, subunit I superfamily | Homologous Superfamily | |
IPR000883 | Cytochrome c oxidase subunit I | Family | |
IPR023615 | Cytochrome c oxidase, subunit I, copper-binding site | Binding Site | |
IPR023616 | Cytochrome c oxidase-like, subunit I domain | Domain | |
IPR033943 | Ba3-like heme-copper oxidase subunit I | Family | |
C [auth B], F [auth E] | IPR002429 | Cytochrome c oxidase subunit II-like C-terminal | Domain |
C [auth B], F [auth E] | IPR008972 | Cupredoxin | Homologous Superfamily |
C [auth B], F [auth E] | IPR001505 | Copper centre Cu(A) | Binding Site |
C [auth B], F [auth E] | IPR034214 | Ba3-like heme-copper oxidase subunit II, C-terminal | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex IV (cytochrome c oxidase) | Cytochrome c oxidases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |