7D66

Crystal structure of retroviral protease-like domain of Ddi1 from Toxoplasma gondii

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
D [auth C]	SCOP2 Family	Dimeric aspartyl proteases	8106642	4004443	SCOP2 (2022-06-29)
D [auth C]	SCOP2 Superfamily	Acid proteases	8106643	3001059	SCOP2 (2022-06-29)
E [auth F]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
K [auth L]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	Acid proteases	8106643	3001059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	PF09668	e7d66B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
B [auth A]	PF09668	e7d66A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
C [auth D]	PF09668	e7d66D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
D [auth C]	PF09668	e7d66C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
E [auth F]	PF09668	e7d66F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
F [auth E]	PF09668	e7d66E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
G [auth H]	PF09668	e7d66H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
H [auth G]	PF09668	e7d66G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
I [auth J]	PF09668	e7d66J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
J [auth I]	PF09668	e7d66I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
K [auth L]	PF09668	e7d66L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)
L [auth K]	PF09668	e7d66K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: PF09668	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	PF09668	Aspartyl protease (Asp_protease)	Aspartyl protease	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	Ubiquitin family protein	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR033882	DNA damage inducible protein 1 ubiquitin-like domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR009060	UBA-like superfamily	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR000626	Ubiquitin-like domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR019103	Aspartic peptidase, DDI1-type	Domain
A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], A [auth B], B [auth A], C [auth D], D [auth C], E [auth F], F [auth E], G [auth H], H [auth G], I [auth J], J [auth I], K [auth L], L [auth K]	IPR015940	Ubiquitin-associated domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.