Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
G [auth A]d6z1fa2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
G [auth A]d6z1fa1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
H [auth B]d6z1fb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
H [auth B]d6z1fb1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
I [auth C]d6z1fc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
I [auth C]d6z1fc1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
J [auth D]d6z1fd2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
J [auth D]d6z1fd1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
K [auth E]d6z1fe2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
K [auth E]d6z1fe1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
L [auth F]d6z1ff2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
L [auth F]d6z1ff1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
M [auth G]d6z1fg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
M [auth G]d6z1fg1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
N [auth H]d6z1fh2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
N [auth H]d6z1fh1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
O [auth I]d6z1fi_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
P [auth J]d6z1fj_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
Q [auth K]d6z1fk_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
R [auth L]d6z1fl_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
S [auth M]d6z1fm_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
T [auth N]d6z1fn_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
U [auth O]d6z1fo_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
V [auth P]d6z1fp_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth I]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
P [auth J]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
Q [auth K]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyRuBisCO small subunit8094084 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]PF21228e6z1f11 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21228ECOD (1.6)
A [auth 1]PF00004e6z1f12 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
B [auth 2]PF21228e6z1f22 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21228ECOD (1.6)
B [auth 2]PF00004e6z1f21 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
C [auth 3]PF21228e6z1f31 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21228ECOD (1.6)
C [auth 3]PF00004e6z1f32 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
D [auth 4]PF21228e6z1f42 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21228ECOD (1.6)
D [auth 4]PF00004e6z1f41 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
E [auth 5]PF21228e6z1f52 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21228ECOD (1.6)
E [auth 5]PF00004e6z1f51 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
F [auth 6]PF21228e6z1f62 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF21228ECOD (1.6)
F [auth 6]PF00004e6z1f61 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
G [auth A]PF02788e6z1fA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
G [auth A]PF00016e6z1fA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
H [auth B]PF02788e6z1fB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
H [auth B]PF00016e6z1fB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
I [auth C]PF02788e6z1fC1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
I [auth C]PF00016e6z1fC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
J [auth D]PF02788e6z1fD2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
J [auth D]PF00016e6z1fD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
K [auth E]PF02788e6z1fE2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
K [auth E]PF00016e6z1fE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
L [auth F]PF02788e6z1fF1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
L [auth F]PF00016e6z1fF2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
M [auth G]PF02788e6z1fG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
M [auth G]PF00016e6z1fG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
N [auth H]PF02788e6z1fH2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
N [auth H]PF00016e6z1fH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
O [auth I]PF00101e6z1fI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
P [auth J]PF00101e6z1fJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
Q [auth K]PF00101e6z1fK1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
R [auth L]PF00101e6z1fL1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
S [auth M]PF00101e6z1fM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
T [auth N]PF00101e6z1fN1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
U [auth O]PF00101e6z1fO1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
V [auth P]PF00101e6z1fP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].Domain
PF21228Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical (RuBisCO_activase_AAA_helical)Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helicalThis domain is found in Ribulose bisphosphate carboxylase/oxygenase activase from Nicotiana tabacum (RuBisCO activase) and similar proteins from plants and cyanobacteria. This enzyme facilitates the removal of the sugar phosphate inhibitors of RuBisC ...This domain is found in Ribulose bisphosphate carboxylase/oxygenase activase from Nicotiana tabacum (RuBisCO activase) and similar proteins from plants and cyanobacteria. This enzyme facilitates the removal of the sugar phosphate inhibitors of RuBisCO, the enzyme that catalyses the fixation of atmospheric CO2 in photosynthesis. This protein is organised into an N-terminal, followed by a AAA module and a 23-residue C-terminal extension. The AAA module has an alpha-beta and an alpha-helical subdomains. This entry covers part of the alpha-beta subdomain and the C-terminal extension [1-4].
Domain
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ribulose bisphosphate carboxylase/oxygenase activase - -
Ribulose bisphosphate carboxylase large chain
Ribulose bisphosphate carboxylase small chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR044960Ribulose bisphosphate carboxylase/oxygenase activase-likeFamily
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR003959ATPase, AAA-type, coreDomain
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR048571Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helicalDomain
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain