Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2 FamilyRibosomal protein L16p8097499 4003717 SCOP2 (2022-06-29)
ISCOP2 SuperfamilyRibosomal protein L16p/L10e8097500 3000884 SCOP2 (2022-06-29)
PSCOP2 FamilyL23p8097493 4000943 SCOP2 (2022-06-29)
PSCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8097494 3000210 SCOP2 (2022-06-29)
JSCOP2B SuperfamilyProkaryotic ribosomal protein L178097530 3000995 SCOP2B (2022-06-29)
KSCOP2 FamilyRibosomal protein L18p and S118097515 4000555 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyTranslational machinery components8097516 3000571 SCOP2 (2022-06-29)
LSCOP2 FamilyRibosomal protein L198097485 4001761 SCOP2 (2022-06-29)
LSCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8097486 3000334 SCOP2 (2022-06-29)
MSCOP2 FamilyRibosomal protein L208097467 4001930 SCOP2 (2022-06-29)
MSCOP2 SuperfamilyRibosomal protein L208097468 3000563 SCOP2 (2022-06-29)
NSCOP2B Superfamilyl21p-like8097532 3002005 SCOP2B (2022-06-29)
OSCOP2 FamilyRibosomal protein L228097497 4001212 SCOP2 (2022-06-29)
OSCOP2 SuperfamilyRibosomal protein L228097498 3001078 SCOP2 (2022-06-29)
QSCOP2 FamilyRibosomal proteins L24p and L21e8097507 4001752 SCOP2 (2022-06-29)
QSCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8097508 3000334 SCOP2 (2022-06-29)
RSCOP2B SuperfamilyRibosomal protein L25-like8097462 3001161 SCOP2B (2022-06-29)
SSCOP2 FamilyRibosomal L27 protein8097533 4001900 SCOP2 (2022-06-29)
SSCOP2 SuperfamilyRibosomal L27 protein-like8097534 3000539 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyTranslational proteins8097490 3000811 SCOP2B (2022-06-29)
TSCOP2 FamilyRibosomal protein L288097473 4003961 SCOP2 (2022-06-29)
TSCOP2 SuperfamilyL28p-like8097474 3001966 SCOP2 (2022-06-29)
USCOP2 FamilyRibosomal protein L29 (L29p)8097501 4000600 SCOP2 (2022-06-29)
USCOP2 SuperfamilyRibosomal protein L29 (L29p)8097502 3000713 SCOP2 (2022-06-29)
VSCOP2B SuperfamilyRibosomal protein L30p/L7e8097518 3001378 SCOP2B (2022-06-29)
WSCOP2 FamilyRibosomal protein L31p8097479 4003966 SCOP2 (2022-06-29)
WSCOP2 SuperfamilyL28p-like8097480 3001966 SCOP2 (2022-06-29)
XSCOP2 FamilyRibosomal protein L32p8097459 4000508 SCOP2 (2022-06-29)
XSCOP2 SuperfamilyZn-binding ribosomal proteins8097460 3001320 SCOP2 (2022-06-29)
YSCOP2 FamilyRibosomal protein L33p8097475 4000511 SCOP2 (2022-06-29)
YSCOP2 SuperfamilyZn-binding ribosomal proteins8097476 3001320 SCOP2 (2022-06-29)
CSCOP2 FamilyRibosomal protein L48097491 4003628 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyRibosomal protein L48097492 3001146 SCOP2 (2022-06-29)
EA [auth a]SCOP2 FamilyRibosomal protein L35p8097469 4003406 SCOP2 (2022-06-29)
EA [auth a]SCOP2 SuperfamilyL35p-like8097470 3000790 SCOP2 (2022-06-29)
FA [auth b]SCOP2B SuperfamilyRibosomal protein L368097522 3001346 SCOP2B (2022-06-29)
DSCOP2 FamilyRibosomal protein L58097509 4001498 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyRL5-like8097510 3001709 SCOP2 (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L138097536 3001134 SCOP2B (2022-06-29)
GSCOP2 FamilyRibosomal protein L148097505 4001826 SCOP2 (2022-06-29)
GSCOP2 Superfamily50S Ribosomal protein L14-like8097506 3000433 SCOP2 (2022-06-29)
HSCOP2 FamilyRibosomal proteins L15p and L18e8097519 4003555 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyRibosomal proteins L15p and L18e8097520 3001045 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00181e6ysiA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
APF03947e6ysiA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
IPF00252e6ysiI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
PPF00276e6ysiP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
JPF01196e6ysiJ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
KPF00861e6ysiK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
LPF01245e6ysiL1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
MPF00453e6ysiM1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
NPF00829e6ysiN1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
OPF00237e6ysiO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
QPF00467,PF17136e6ysiQ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
RPF01386e6ysiR1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
SPF01016e6ysiS1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
BPF00297e6ysiB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
TPF00830e6ysiT1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
UPF00831e6ysiU1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
VPF00327e6ysiV1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
WPF01197e6ysiW1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
XPF01783e6ysiX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
YPF00471e6ysiY1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
ZPF00468e6ysiZ1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
CPF00573e6ysiC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
EA [auth a]PF01632e6ysia1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
FA [auth b]PF00444e6ysib1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
DPF00281,PF00673e6ysiD1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
EPF00347e6ysiE2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
FPF00572e6ysiF1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
GPF00238e6ysiG1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
HPF00828e6ysiH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
EA [auth a]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
FA [auth b]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
50S ribosomal protein L2
50S ribosomal protein L16
50S ribosomal protein L23
50S ribosomal protein L17
50S ribosomal protein L18
50S ribosomal protein L19
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L22
50S ribosomal protein L24
50S ribosomal protein L25
50S ribosomal protein L27
50S ribosomal protein L3
50S ribosomal protein L28
50S ribosomal protein L29
50S ribosomal protein L30
50S ribosomal protein L31
50S ribosomal protein L32
50S ribosomal protein L33
50S ribosomal protein L34
AA [auth 1]23S ribosomal RNA---
BA [auth 5]5S ribosomal RNA---
CA [auth 6],
DA [auth 8]
E-site tRNA---
50S ribosomal protein L4
EA [auth a]50S ribosomal protein L35
FA [auth b]50S ribosomal protein L36
50S ribosomal protein L5
50S ribosomal protein L6
50S ribosomal protein L13
50S ribosomal protein L14
50S ribosomal protein L15

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
IPR000456Large ribosomal subunit protein bL17Family
IPR005484Large ribosomal subunit protein uL18Family
IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR020055Ribosomal protein bL25, short-formFamily
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
IPR001684Large ribosomal subunit protein bL27Family
IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
IPR026569Large ribosomal subunit protein bL28Family
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IPR001854Large ribosomal subunit protein uL29Family
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR002150Large ribosomal subunit protein bL31 type A/BFamily
IPR027491Large ribosomal subunit protein bL31 type AFamily
IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IPR002677Large ribosomal subunit protein bL32Family
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
IPR001705Large ribosomal subunit protein bL33Family
IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
IPR000271Large ribosomal subunit protein bL34Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
EA [auth a]IPR021137Large ribosomal subunit protein bL35-likeFamily
EA [auth a]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
EA [auth a]IPR001706Large ribosomal subunit protein bL35Family
EA [auth a]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
FA [auth b]IPR000473Large ribosomal subunit protein bL36Family
FA [auth b]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IPR000218Large ribosomal subunit protein uL14Family
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR030878Large ribosomal subunit protein uL15Family
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily