6Y5I
Dilated form 1 of X-31 Influenza Haemagglutinin at pH 5 (State II)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088038 | 3001616 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088038 | 3001616 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088038 | 3001616 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087826 | 3001342 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087826 | 3001342 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8087826 | 3001342 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Hemagglutinin_2nd | e6y5iB1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: Hemagglutinin_2nd | ECOD (1.6) |
C [auth D] | Hemagglutinin_2nd | e6y5iD1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: Hemagglutinin_2nd | ECOD (1.6) |
D [auth F] | Hemagglutinin_2nd | e6y5iF1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: Hemagglutinin_2nd | ECOD (1.6) |
A | Hemagglutinin_1st | e6y5iA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
E | Hemagglutinin_1st | e6y5iE1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
F [auth C] | Hemagglutinin_1st | e6y5iC1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B, C [auth D], D [auth F] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
A, E, F [auth C] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B, C [auth D], D [auth F] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
B, C [auth D], D [auth F] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
B, C [auth D], D [auth F] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
B, C [auth D], D [auth F] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
A, E, F [auth C] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
A, E, F [auth C] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
A, E, F [auth C] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
A, E, F [auth C] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Glycoproteins | Influenza Hemagglutinin, ectodomain of X-31 Haemagglutinin at pH 8 |