6XRR
Structure of SciW bound to the Rhs1 Transmembrane Domain from Salmonella typhimurium
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth E] | PF08786 | e6xrrE1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| B [auth I] | PF08786 | e6xrrI1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| D [auth A] | PF08786 | e6xrrA1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| E [auth B] | PF08786 | e6xrrB1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| H [auth F] | PF08786 | e6xrrF1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| G [auth D] | PF08786 | e6xrrD1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| J [auth H] | PF08786 | e6xrrH1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
| K | PF08786 | e6xrrK1 | A: a+b three layers | X: Mog1p/PsbP-like | H: Mog1p/PsbP-like (From Topology) | T: Mog1p/PsbP-like | F: PF08786 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF08786 | DcrB (DcrB) | DcrB | DcrB is a bacterial protein required for phages C1 and C6 adsorption [1,2]. It may be involved in the opening or formation of diffusion channels in the outer membrane [2]. Structurally, it consist of an antiparallel beta sheet with some alpha helical ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Putative cytoplasmic protein | - | - | - | |
| C [auth J], F [auth C], I [auth G], L | RHS repeat protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR014894 | Inner membrane lipoprotein DcrB/EagT6 | Family | |
| IPR016123 | Mog1/PsbP, alpha/beta/alpha sandwich | Homologous Superfamily | |
| C [auth J], F [auth C], I [auth G], L | IPR006530 | YD repeat | Repeat |
| C [auth J], F [auth C], I [auth G], L | IPR022385 | Rhs repeat-associated core | Domain |
| C [auth J], F [auth C], I [auth G], L | IPR045351 | Domain of unknown function DUF6531 | Domain |
| C [auth J], F [auth C], I [auth G], L | IPR008727 | PAAR motif | Repeat |
| C [auth J], F [auth C], I [auth G], L | IPR029103 | Bacterial toxin 47 | Domain |
| C [auth J], F [auth C], I [auth G], L | IPR011044 | Quinoprotein amine dehydrogenase, beta chain-like | Homologous Superfamily |
| C [auth J], F [auth C], I [auth G], L | IPR031325 | RHS repeat | Repeat |
| C [auth J], F [auth C], I [auth G], L | IPR001826 | RHS protein | Family |
