6WJ6
Cryo-EM structure of apo-Photosystem II from Synechocystis sp. PCC 6803
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Bacterial photosystem II reaction centre L and M subunits | 8098521 | 4002035 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8098522 | 3000736 | SCOP2 (2022-06-29) |
J [auth L] | SCOP2 Family | PsbL-like | 8099537 | 4002634 | SCOP2 (2022-06-29) |
J [auth L] | SCOP2 Superfamily | Photosystem II reaction center protein L PsbL | 8099538 | 3001523 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Family | PsbM-like | 8101578 | 4002664 | SCOP2 (2022-06-29) |
K [auth M] | SCOP2 Superfamily | Photosystem II reaction center protein M PsbM | 8101579 | 3001573 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Photosystem II antenna protein-like | 8098281 | 4002735 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Photosystem II antenna protein-like | 8098282 | 3001674 | SCOP2 (2022-06-29) |
C | SCOP2 Family | Photosystem II antenna protein-like | 8098321 | 4002735 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Photosystem II antenna protein-like | 8098322 | 3001674 | SCOP2 (2022-06-29) |
D | SCOP2 Family | Bacterial photosystem II reaction centre L and M subunits | 8098319 | 4002035 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8098320 | 3000736 | SCOP2 (2022-06-29) |
E | SCOP2 Family | Cytochrome b559 subunits | 8098315 | 4002681 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Cytochrome b559 subunits | 8098316 | 3001602 | SCOP2 (2022-06-29) |
F | SCOP2 Family | Cytochrome b559 subunits | 8098317 | 4002681 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Cytochrome b559 subunits | 8098318 | 3001602 | SCOP2 (2022-06-29) |
G [auth H] | SCOP2 Family | PsbH-like | 8098515 | 4002649 | SCOP2 (2022-06-29) |
G [auth H] | SCOP2 Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098516 | 3001547 | SCOP2 (2022-06-29) |
H [auth I] | SCOP2 Family | PsbI-like | 8099533 | 4002676 | SCOP2 (2022-06-29) |
H [auth I] | SCOP2 Superfamily | Photosystem II reaction center protein I PsbI | 8099534 | 3001590 | SCOP2 (2022-06-29) |
I [auth K] | SCOP2 Family | PsbK-like | 8098519 | 4002673 | SCOP2 (2022-06-29) |
I [auth K] | SCOP2 Superfamily | Photosystem II reaction center protein K PsbK | 8098520 | 3001585 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00124 | e6wj6A1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
J [auth L] | PF02419 | e6wj6L1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PF02419 | ECOD (1.6) |
K [auth M] | PF05151 | e6wj6M1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: PF05151 | ECOD (1.6) |
L [auth T] | PF01405 | e6wj6T1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PF01405 | ECOD (1.6) |
M [auth X] | PF06596 | e6wj6X1 | A: extended segments | X: Photosystem II PsbX protein (From Topology) | H: Photosystem II PsbX protein (From Topology) | T: Photosystem II PsbX protein | F: PF06596 | ECOD (1.6) |
B | PF00421 | e6wj6B2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
B | PF00421 | e6wj6B1 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PF00421 | ECOD (1.6) |
C | PF00421 | e6wj6C1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
D | PF00124 | e6wj6D1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
E | PF00283,PF00284 | e6wj6E1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283,PF00284 | ECOD (1.6) |
F | PF00283 | e6wj6F1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283 | ECOD (1.6) |
G [auth H] | PF00737 | e6wj6H1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PF00737 | ECOD (1.6) |
H [auth I] | PF02532 | e6wj6I1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PF02532 | ECOD (1.6) |
I [auth K] | PF02533 | e6wj6K1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PF02533 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem II |