6VK0
CryoEM structure of Hrd1-Usa1/Der1/Hrd3 of the flipped topology
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | PF04511 | e6vk0C1 | A: alpha bundles | X: Rhomboid-like (From Topology) | H: Rhomboid-like (From Topology) | T: Rhomboid-like | F: PF04511 | ECOD (1.6) |
C [auth A] | PF08238 | e6vk0A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF08238 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF04511 | Der1-like family (DER1) | Der1-like family | - | Family |
C [auth A] | PF08238 | Sel1 repeat (Sel1) | Sel1 repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
A [auth D] | IPR000626 | Ubiquitin-like domain | Domain |
B [auth C] | IPR007599 | Derlin | Family |
C [auth A] | IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
C [auth A] | IPR006597 | Sel1-like repeat | Repeat |
D [auth B] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
D [auth B] | IPR001841 | Zinc finger, RING-type | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | AAA-ATPase superfamily, transmembrane | ER retrotranslocon family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |