6UZV
The structure of a red shifted photosystem I complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
L [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
M [auth 1] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
P [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
Q [auth 2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
R [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
S [auth 4] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
T [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
U [auth 5] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
V [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
W [auth 6] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
X [auth i] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
Y [auth h] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
AA [auth 7] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
H [auth J] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
Z [auth j] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
DA [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
EA [auth 0] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
I [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
FA [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
GA [auth 9] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
J [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00223 | e6uzvA2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
A | PF00223 | e6uzvA1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
L [auth a] | PF00223 | e6uzva2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
L [auth a] | PF00223 | e6uzva1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
M [auth 1] | PF00223 | e6uzv12 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
M [auth 1] | PF00223 | e6uzv11 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
B | PF00223 | e6uzvB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
B | PF00223 | e6uzvB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
P [auth b] | PF00223 | e6uzvb2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
P [auth b] | PF00223 | e6uzvb1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
Q [auth 2] | PF00223 | e6uzv21 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
Q [auth 2] | PF00223 | e6uzv22 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
C | PF00037 | e6uzvC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
N [auth c] | PF00037 | e6uzvc1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
O [auth 3] | PF00037 | e6uzv31 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
D | PF02531 | e6uzvD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
R [auth d] | PF02531 | e6uzvd1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
S [auth 4] | PF02531 | e6uzv41 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
E | PF02427 | e6uzvE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
T [auth e] | PF02427 | e6uzve1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
U [auth 5] | PF02427 | e6uzv51 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
F | PF02507 | e6uzvF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
V [auth f] | PF02507 | e6uzvf1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
W [auth 6] | PF02507 | e6uzv61 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
G [auth I] | PF00796 | e6uzvI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
X [auth i] | PF00796 | e6uzvi1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
Y [auth h] | PF00796 | e6uzvh1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
AA [auth 7] | PF01701 | e6uzv71 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
H [auth J] | PF01701 | e6uzvJ1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
Z [auth j] | PF01701 | e6uzvj1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
DA [auth l] | PF02605 | e6uzvl1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
EA [auth 0] | PF02605 | e6uzv01 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
I [auth L] | PF02605 | e6uzvL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
FA [auth m] | PF07465 | e6uzvm1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
GA [auth 9] | PF07465 | e6uzv91 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
J [auth M] | PF07465 | e6uzvM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
BA [auth k] | PF01241 | e6uzvk1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
CA [auth 8] | PF01241 | e6uzv81 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
K | PF01241 | e6uzvK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, L [auth a], M [auth 1] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
B, P [auth b], Q [auth 2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
C, N [auth c], O [auth 3] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
D, R [auth d], S [auth 4] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
E, T [auth e], U [auth 5] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
F, V [auth f], W [auth 6] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
G [auth I], X [auth i], Y [auth h] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
AA [auth 7], H [auth J], Z [auth j] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
DA [auth l], EA [auth 0], I [auth L] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
FA [auth m], GA [auth 9], J [auth M] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
BA [auth k], CA [auth 8], K | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I chimera |