6PYT

CryoEM Structure of Pyocin R2 - precontracted - trunk

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth m]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
N [auth a]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
O [auth n]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
P [auth o]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
Q [auth p]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
S [auth r]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
T [auth b]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
U [auth c]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
R [auth q]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
V [auth d]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
W [auth e]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)
X [auth f]SCOP2B SuperfamilyT6SS-like8101743 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth m]PF04985e6pytm1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
N [auth a]PF04985e6pyta1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
O [auth n]PF04985e6pytn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
P [auth o]PF04985e6pyto1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
Q [auth p]PF04985e6pytp1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
S [auth r]PF04985e6pytr1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
T [auth b]PF04985e6pytb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
U [auth c]PF04985e6pytc1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
R [auth q]PF04985e6pytq1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
V [auth d]PF04985e6pytd1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
W [auth e]PF04985e6pyte1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
X [auth f]PF04985e6pytf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Phage tail proteinsF: PF04985ECOD (1.6)
C [auth A]PF17482e6pytA1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
C [auth A]PF04984,PF22671e6pytA2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
H [auth R]PF17482e6pytR2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
H [auth R]PF04984,PF22671e6pytR1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
I [auth B]PF17482e6pytB1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
I [auth B]PF04984,PF22671e6pytB2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
K [auth D]PF17482e6pytD2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
K [auth D]PF04984,PF22671e6pytD1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
L [auth E]PF17482e6pytE1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
L [auth E]PF04984,PF22671e6pytE2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
M [auth F]PF17482e6pytF2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
M [auth F]PF04984,PF22671e6pytF1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
B [auth M]PF17482e6pytM1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
B [auth M]PF04984,PF22671e6pytM2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
D [auth N]PF17482e6pytN1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
D [auth N]PF04984,PF22671e6pytN2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
E [auth O]PF17482e6pytO2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
E [auth O]PF04984,PF22671e6pytO1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
F [auth P]PF17482e6pytP2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
F [auth P]PF04984,PF22671e6pytP1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
G [auth Q]PF17482e6pytQ1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
G [auth Q]PF04984,PF22671e6pytQ2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)
J [auth C]PF17482e6pytC2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: PF17482ECOD (1.6)
J [auth C]PF04984,PF22671e6pytC1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: PF04984,PF22671ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006498Tail tube proteinFamily
IPR020287Tail sheath protein, C-terminal domainDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain