Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070559 3001045 SCOP2B (2022-06-29)
K [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089014 3000995 SCOP2B (2022-06-29)
M [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082419 3000334 SCOP2B (2022-06-29)
N [auth Q]SCOP2B SuperfamilyRibosomal protein L208075004 3000563 SCOP2B (2022-06-29)
O [auth R]SCOP2B Superfamilyl21p-like8082437 3002005 SCOP2B (2022-06-29)
P [auth S]SCOP2B SuperfamilyRibosomal protein L228076724 3001078 SCOP2B (2022-06-29)
Q [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077095 3000210 SCOP2B (2022-06-29)
R [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082505 3000334 SCOP2B (2022-06-29)
S [auth V]SCOP2B SuperfamilyRibosomal L27 protein-like8075028 3000539 SCOP2B (2022-06-29)
T [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076285 3001378 SCOP2B (2022-06-29)
U [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins8081585 3001320 SCOP2B (2022-06-29)
V [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8076730 3000713 SCOP2B (2022-06-29)
X [auth W]SCOP2B SuperfamilyRbgA C-terminal domain-like8056747 3002359 SCOP2B (2022-06-29)
X [auth W]SCOP2B SuperfamilyRas-like P-loop GTPases8019331 3002022 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyTranslational proteins8089142 3000811 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L48080694 3001146 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyRibosomal protein L138066055 3001134 SCOP2B (2022-06-29)
I [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8072020 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth L]PF00828e6ppkL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
K [auth N]PF01196e6ppkN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
L [auth O]PF00861e6ppkO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
M [auth P]PF01245e6ppkP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
N [auth Q]PF00453e6ppkQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
O [auth R]PF00829e6ppkR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
P [auth S]PF00237e6ppkS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
Q [auth T]PF00276e6ppkT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
R [auth U]PF00467,PF17136e6ppkU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
S [auth V]PF01016e6ppkV1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
T [auth Z]PF00327e6ppkZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
U [auth b]PF01783e6ppkb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
V [auth Y]PF00831e6ppkY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
W [auth d]PF00468e6ppkd1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
X [auth W]PF01926e6ppkW1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF01926ECOD (1.6)
CPF00181e6ppkC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
CPF03947e6ppkC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
DPF00297e6ppkD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
EPF00573e6ppkE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
FPF00281,PF00673e6ppkF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
GF_UNCLASSIFIEDe6ppkG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: F_UNCLASSIFIEDECOD (1.6)
GPF00347e6ppkG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
H [auth J]PF00572e6ppkJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
I [auth K]PF00238e6ppkK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
K [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
L [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
M [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
N [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
O [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
P [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Q [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
R [auth U]PF00467KOW motif (KOW)KOW motif- Family
S [auth V]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
T [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
U [auth b]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
V [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
W [auth d]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
X [auth W]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
H [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
I [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S rRNA---
J [auth L]50S ribosomal protein L15
K [auth N]50S ribosomal protein L17
L [auth O]50S ribosomal protein L18
M [auth P]50S ribosomal protein L19
N [auth Q]50S ribosomal protein L20
O [auth R]50S ribosomal protein L21
P [auth S]50S ribosomal protein L22
Q [auth T]50S ribosomal protein L23
R [auth U]50S ribosomal protein L24
S [auth V]50S ribosomal protein L27
5S rRNA---
T [auth Z]50S ribosomal protein L30
U [auth b]50S ribosomal protein L32
V [auth Y]50S ribosomal protein L29
W [auth d]50S ribosomal protein L34
X [auth W]Ribosome biogenesis GTPase A
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
H [auth J]50S ribosomal protein L13
I [auth K]50S ribosomal protein L14

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
J [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
J [auth L]IPR030878Large ribosomal subunit protein uL15Family
J [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
J [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
K [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
K [auth N]IPR000456Large ribosomal subunit protein bL17Family
L [auth O]IPR005484Large ribosomal subunit protein uL18Family
L [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
M [auth P]IPR001857Large ribosomal subunit protein bL19Family
M [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
M [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
M [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
N [auth Q]IPR005813Large ribosomal subunit protein bL20Family
O [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
O [auth R]IPR001787Large ribosomal subunit protein bL21Family
O [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
O [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
P [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
P [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
P [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
P [auth S]IPR001063Large ribosomal subunit protein uL22Family
P [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Q [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Q [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth U]IPR003256Large ribosomal subunit protein uL24Family
R [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth U]IPR005824KOWDomain
R [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth V]IPR001684Large ribosomal subunit protein bL27Family
S [auth V]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
T [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
T [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
T [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
T [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
U [auth b]IPR002677Large ribosomal subunit protein bL32Family
U [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth b]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
V [auth Y]IPR001854Large ribosomal subunit protein uL29Family
V [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth d]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
W [auth d]IPR000271Large ribosomal subunit protein bL34Family
X [auth W]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
X [auth W]IPR019991GTP-binding protein, ribosome biogenesisFamily
X [auth W]IPR016478GTPase, MTG1Family
X [auth W]IPR006073GTP binding domainDomain
X [auth W]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
X [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
H [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
H [auth J]IPR005822Large ribosomal subunit protein uL13Family
H [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
I [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
I [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
I [auth K]IPR000218Large ribosomal subunit protein uL14Family
I [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site