6OVI
Crystal Structure of KDPG Aldolase from Legionella Pneumophila with pyruvate captured at low pH as a covalent carbinolamine intermediate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6ovia_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | automated matches | automated matches | (Legionella pneumophila ) [TaxId: 446 ], | SCOPe (2.08) |
B | d6ovib_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | automated matches | automated matches | (Legionella pneumophila ) [TaxId: 446 ], | SCOPe (2.08) |
C | d6ovic_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | automated matches | automated matches | (Legionella pneumophila ) [TaxId: 446 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Class I aldolase | 8095272 | 4003216 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Aldolase | 8095273 | 3000445 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Aldolase | 8095273 | 3000445 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Aldolase | 8095273 | 3000445 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Aldolase | e6oviA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Aldolase | ECOD (1.6) |
B | Aldolase | e6oviB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Aldolase | ECOD (1.6) |
C | Aldolase | e6oviC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Aldolase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
B | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
C | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01081 | KDPG and KHG aldolase (Aldolase) | KDPG and KHG aldolase | This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase) | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Keto-deoxy-phosphogluconate aldolase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031338 | KDPG/KHG aldolase, active site 2 | Active Site | |
IPR000887 | KDPG/KHG aldolase | Family | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR031337 | KDPG/KHG aldolase, active site 1 | Active Site |