6N38

Structure of the type VI secretion system TssK-TssF-TssG baseplate subcomplex revealed by cryo-electron microscopy - full map sharpened

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth A]	UNK_F_TYPE	e6n38A1	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
F [auth A]	UNK_F_TYPE	e6n38A2	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
G [auth D]	UNK_F_TYPE	e6n38D2	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
G [auth D]	UNK_F_TYPE	e6n38D1	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
H [auth B]	UNK_F_TYPE	e6n38B2	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
H [auth B]	UNK_F_TYPE	e6n38B1	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
I [auth E]	UNK_F_TYPE	e6n38E2	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
I [auth E]	UNK_F_TYPE	e6n38E1	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
J [auth C]	UNK_F_TYPE	e6n38C1	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
J [auth C]	UNK_F_TYPE	e6n38C2	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)
K [auth F]	UNK_F_TYPE	e6n38F1	A: beta sandwiches	X: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	H: Lactophage receptor-binding protein N-terminal domain-like (From Topology)	T: Lactophage receptor-binding protein N-terminal domain-like	F: UNK_F_TYPE	ECOD (1.6)
K [auth F]	UNK_F_TYPE	e6n38F2	A: alpha arrays	X: L-aspartase middle domain-like	H: TssK neck domain (From Topology)	T: TssK neck domain	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth I], C [auth H]	PF05947	Type VI secretion system, TssF (T6SS_TssF)	Type VI secretion system, TssF	-	Family
B [auth G]	PF06996	Type VI secretion, TssG (T6SS_TssG)	Type VI secretion, TssG	-	Family
F [auth A], G [auth D], H [auth B], I [auth E], J [auth C], F [auth A], G [auth D], H [auth B], I [auth E], J [auth C], K [auth F]	PF05936	Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE (T6SS_VasE)	Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I], C [auth H]	IPR010272	Type VI secretion system TssF	Family
B [auth G]	IPR010732	Type VI secretion, TssG-like	Family
F [auth A], G [auth D], H [auth B], I [auth E], J [auth C], F [auth A], G [auth D], H [auth B], I [auth E], J [auth C], K [auth F]	IPR010263	Type VI secretion system TssK	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.