6MX7
CryoEM structure of chimeric Eastern Equine Encephalitis Virus: Genome-Binding Capsid N-terminal Domain
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071563 | 3000114 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071563 | 3000114 | SCOP2B (2022-06-29) |
C [auth I] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071563 | 3000114 | SCOP2B (2022-06-29) |
D [auth L] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071563 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF00944 | e6mx7C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
B [auth F] | PF00944 | e6mx7F1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
C [auth I] | PF00944 | e6mx7I1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
D [auth L] | PF00944 | e6mx7L1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth F], C [auth I], D [auth L] | PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |