6LOS

Crystal structure of mouse PEDF in complex with heterotrimeric collagen model peptide.

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySerpins8098979 4002658 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySerpins8098980 3001563 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00079e6losA1 A: a+b complex topologyX: Serpins (From Topology)H: Serpins (From Topology)T: SerpinsF: PF00079ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00079Serpin (serine protease inhibitor) (Serpin)Serpin (serine protease inhibitor)Structure is a multi-domain fold containing a bundle of helices and a beta sandwich.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Pigment epithelium-derived factor
B [auth F]Collagen model peptide, type I, alpha 2---
C [auth G]Collagen model peptide, type I, alpha 1---
D [auth H]Collagen model peptide, type I, alpha 1---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR023795Serpin, conserved siteConserved Site
IPR000215Serpin familyFamily
IPR036186Serpin superfamilyHomologous Superfamily
IPR023796Serpin domainDomain
IPR042178Serpin superfamily, domain 1Homologous Superfamily
IPR042185Serpin superfamily, domain 2Homologous Superfamily
IPR033832Pigment epithelium derived factor, serpin domainDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth F]HYP Parent Component: PRO

RESID:  AA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039
C [auth G]HYP Parent Component: PRO

RESID:  AA0030 , AA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , 4-hydroxy-L-proline MOD:00039
D [auth H]HYP Parent Component: PRO

RESID:  AA0030 , AA0030 , AA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , 4-hydroxy-L-proline MOD:00039 , 4-hydroxy-L-proline MOD:00039