6LKQ

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097404 3001397 SCOP2B (2022-06-29)
ESCOP2 FamilyRibosomal protein S68102804 4001337 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyRibosomal protein S68102805 3001323 SCOP2 (2022-06-29)
FSCOP2 FamilyRibosomal protein S78095102 4001112 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyRibosomal protein S78095103 3000799 SCOP2 (2022-06-29)
KSCOP2 FamilyCold shock DNA-binding domain-like8094644 4001909 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyNucleic acid-binding proteins8094645 3000135 SCOP2 (2022-06-29)
MSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8093698 3000068 SCOP2B (2022-06-29)
OSCOP2 FamilyRibosomal protein S168096013 4001077 SCOP2 (2022-06-29)
OSCOP2 SuperfamilyRibosomal protein S168096014 3000680 SCOP2 (2022-06-29)
WSCOP2 FamilyRibosomal protein L48098029 4003628 SCOP2 (2022-06-29)
WSCOP2 SuperfamilyRibosomal protein L48098030 3001146 SCOP2 (2022-06-29)
XSCOP2 FamilyRibosomal protein L58097875 4001498 SCOP2 (2022-06-29)
XSCOP2 SuperfamilyRL5-like8097876 3001709 SCOP2 (2022-06-29)
BA [auth 1]SCOP2 FamilyRibosomal protein L148100867 4001826 SCOP2 (2022-06-29)
BA [auth 1]SCOP2 Superfamily50S Ribosomal protein L14-like8100868 3000433 SCOP2 (2022-06-29)
CA [auth 2]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8096018 3001045 SCOP2B (2022-06-29)
JA [auth a]SCOP2 FamilyRibosomal protein L228097767 4001212 SCOP2 (2022-06-29)
JA [auth a]SCOP2 SuperfamilyRibosomal protein L228097768 3001078 SCOP2 (2022-06-29)
LA [auth c]SCOP2 FamilyRibosomal proteins L24p and L21e8097765 4001752 SCOP2 (2022-06-29)
LA [auth c]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8097766 3000334 SCOP2 (2022-06-29)
OA [auth f]SCOP2 FamilyRibosomal protein L288093475 4003961 SCOP2 (2022-06-29)
OA [auth f]SCOP2 SuperfamilyL28p-like8093476 3001966 SCOP2 (2022-06-29)
RA [auth i]SCOP2 FamilyRibosomal protein L32p8093521 4000508 SCOP2 (2022-06-29)
RA [auth i]SCOP2 SuperfamilyZn-binding ribosomal proteins8093522 3001320 SCOP2 (2022-06-29)
NSCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138093417 4000767 SCOP2 (2022-06-29)
NSCOP2 SuperfamilyS15/NS1 RNA-binding domain8093418 3001284 SCOP2 (2022-06-29)
PSCOP2 FamilyCold shock DNA-binding domain-like8095074 4001909 SCOP2 (2022-06-29)
PSCOP2 SuperfamilyNucleic acid-binding proteins8095075 3000135 SCOP2 (2022-06-29)
RSCOP2 FamilyRibosomal protein S198094057 4001081 SCOP2 (2022-06-29)
RSCOP2 SuperfamilyRibosomal protein S198094058 3000686 SCOP2 (2022-06-29)
TSCOP2 FamilyRibosomal protein S218093477 4006173 SCOP2 (2022-06-29)
TSCOP2 SuperfamilyRibosomal protein S218093478 3002159 SCOP2 (2022-06-29)
VSCOP2 FamilyRibosomal protein L38093569 4002103 SCOP2 (2022-06-29)
VSCOP2 SuperfamilyTranslational proteins8093570 3000811 SCOP2 (2022-06-29)
AA [auth 0]SCOP2 FamilyRibosomal protein L138100807 4003623 SCOP2 (2022-06-29)
AA [auth 0]SCOP2 SuperfamilyRibosomal protein L138100808 3001134 SCOP2 (2022-06-29)
CSCOP2 FamilyRibosomal protein S48096837 4001399 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyAlpha-L RNA-binding motif8096838 3001473 SCOP2 (2022-06-29)
DA [auth 3]SCOP2 FamilyRibosomal protein L16p8097881 4003717 SCOP2 (2022-06-29)
DA [auth 3]SCOP2 SuperfamilyRibosomal protein L16p/L10e8097882 3000884 SCOP2 (2022-06-29)
FA [auth 5]SCOP2 FamilyRibosomal protein L18p and S118097877 4000555 SCOP2 (2022-06-29)
FA [auth 5]SCOP2 SuperfamilyTranslational machinery components8097878 3000571 SCOP2 (2022-06-29)
IA [auth 9]SCOP2 FamilyRibosomal protein l21p8093587 4001630 SCOP2 (2022-06-29)
IA [auth 9]SCOP2 Superfamilyl21p-like8093588 3002005 SCOP2 (2022-06-29)
KA [auth b]SCOP2 FamilyL23p8093681 4000943 SCOP2 (2022-06-29)
KA [auth b]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8093682 3000210 SCOP2 (2022-06-29)
MA [auth d]SCOP2 FamilyRibosomal protein L25-like8093525 4002376 SCOP2 (2022-06-29)
MA [auth d]SCOP2 SuperfamilyRibosomal protein L25-like8093526 3001161 SCOP2 (2022-06-29)
PA [auth g]SCOP2 FamilyRibosomal protein L29 (L29p)8097945 4000600 SCOP2 (2022-06-29)
PA [auth g]SCOP2 SuperfamilyRibosomal protein L29 (L29p)8097946 3000713 SCOP2 (2022-06-29)
UA [auth l]SCOP2 FamilyRibosomal protein L35p8093583 4003406 SCOP2 (2022-06-29)
UA [auth l]SCOP2 SuperfamilyL35p-like8093584 3000790 SCOP2 (2022-06-29)
VA [auth m]SCOP2 FamilyRibosomal protein L368093553 4003715 SCOP2 (2022-06-29)
VA [auth m]SCOP2 SuperfamilyRibosomal protein L368093554 3001346 SCOP2 (2022-06-29)
WA [auth n]SCOP2 FamilyRibosomal protein L10-like8096579 4001998 SCOP2 (2022-06-29)
WA [auth n]SCOP2 SuperfamilyRibosomal protein L10-like8096580 3000665 SCOP2 (2022-06-29)
GSCOP2 FamilyRibosomal protein S88095406 4002027 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyRibosomal protein S88095407 3000709 SCOP2 (2022-06-29)
HSCOP2 FamilyTranslational machinery components8095228 4000951 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyRibosomal protein S5 domain 2-like8095229 3000100 SCOP2 (2022-06-29)
ISCOP2 FamilyRibosomal protein S108095176 4001240 SCOP2 (2022-06-29)
ISCOP2 SuperfamilyRibosomal protein S108095177 3001336 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00318e6lkqA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
BPF00189e6lkqB2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
BPF07650e6lkqB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
DPF03719e6lkqD1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
DPF00333e6lkqD2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
EPF01250e6lkqE1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
FPF00177e6lkqF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
KPF00164e6lkqK1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
MPF00253e6lkqM1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
OPF00886e6lkqO1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
UPF00181e6lkqU2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
UPF03947e6lkqU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
WPF00573e6lkqW1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
XPF00281,PF00673e6lkqX1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
YPF00347e6lkqY2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
ZPF00298e6lkqZ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
ZPF03946e6lkqZ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
BA [auth 1]PF00238e6lkq11 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
CA [auth 2]PF00828e6lkq21 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
EA [auth 4]PF01196e6lkq41 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
HA [auth 8]PF00453e6lkq81 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
JA [auth a]PF00237e6lkqa1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
LA [auth c]PF00467,PF17136e6lkqc1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
NA [auth e]PF01016e6lkqe1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
OA [auth f]PF00830e6lkqf1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
RA [auth i]PF01783e6lkqi1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
TA [auth k]PF00468e6lkqk1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
JPF00411e6lkqJ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
LPF00416e6lkqL1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
NPF00312e6lkqN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
PPF00366e6lkqP1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
QPF01084e6lkqQ1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
RPF00203e6lkqR1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
SPF01649e6lkqS1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
TPF01165e6lkqT1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
VPF00297e6lkqV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
AA [auth 0]PF00572e6lkq01 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
CPF00163,PF01479e6lkqC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
DA [auth 3]PF00252e6lkq31 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
FA [auth 5]PF00861e6lkq51 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
GA [auth 6]PF01245e6lkq61 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
IA [auth 9]PF00829e6lkq91 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
KA [auth b]PF00276e6lkqb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
MA [auth d]PF01386e6lkqd1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
PA [auth g]PF00831e6lkqg1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
QA [auth h]PF00327e6lkqh1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
SA [auth j]PF00471e6lkqj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
UA [auth l]PF01632e6lkql1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
VA [auth m]PF00444e6lkqm1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
WA [auth n]PF00466e6lkqn1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
AB [auth r]PF16320e6lkqr1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
XA [auth o]PF16320e6lkqo1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
YA [auth p]PF16320e6lkqp1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
ZA [auth q]PF16320e6lkqq1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
EB [auth v]PF22042e6lkqv3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF22042ECOD (1.6)
EB [auth v]PF16658e6lkqv1 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF16658ECOD (1.6)
EB [auth v]PF00009e6lkqv2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
GPF00410e6lkqG2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
GPF00410e6lkqG1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
HPF00380e6lkqH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
IPF00338e6lkqI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
BA [auth 1]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
CA [auth 2]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
EA [auth 4]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
JA [auth a]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
LA [auth c]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
LA [auth c]PF00467KOW motif (KOW)KOW motif- Family
RA [auth i]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
AA [auth 0]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
KA [auth b]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
MA [auth d]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
VA [auth m]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
WA [auth n]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
EB [auth v]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
EB [auth v]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
EB [auth v]PF16658Class II release factor RF3, C-terminal domain (RF3_C)Class II release factor RF3, C-terminal domain- Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
30S ribosomal protein S2
30S ribosomal protein S3---
30S ribosomal protein S5---
30S ribosomal protein S6---
30S ribosomal protein S7---
30S ribosomal protein S12---
30S ribosomal protein S14
30S ribosomal protein S16---
50S ribosomal protein L2---
50S ribosomal protein L4---
50S ribosomal protein L5---
50S ribosomal protein L6
50S ribosomal protein L11---
BA [auth 1]50S ribosomal protein L14---
CA [auth 2]50S ribosomal protein L15
EA [auth 4]50S ribosomal protein L17---
HA [auth 8]50S ribosomal protein L20---
JA [auth a]50S ribosomal protein L22
LA [auth c]50S ribosomal protein L24
NA [auth e]50S ribosomal protein L27---
OA [auth f]50S ribosomal protein L28---
RA [auth i]50S ribosomal protein L32---
TA [auth k]50S ribosomal protein L34---
CB [auth t]23S ribosomal RNA---
DB [auth u]5S ribosomal RNA---
30S ribosomal protein S11---
30S ribosomal protein S13---
30S ribosomal protein S15---
30S ribosomal protein S17---
30S ribosomal protein S18---
30S ribosomal protein S19---
30S ribosomal protein S20---
30S ribosomal protein S21
50S ribosomal protein L3---
AA [auth 0]50S ribosomal protein L13---
30S ribosomal protein S4
DA [auth 3]50S ribosomal protein L16---
FA [auth 5]50S ribosomal protein L18---
GA [auth 6]50S ribosomal protein L19---
IA [auth 9]50S ribosomal protein L21---
KA [auth b]50S ribosomal protein L23---
MA [auth d]50S ribosomal protein L25---
PA [auth g]50S ribosomal protein L29---
QA [auth h]50S ribosomal protein L30---
SA [auth j]50S ribosomal protein L33---
UA [auth l]50S ribosomal protein L35---
VA [auth m]50S ribosomal protein L36
WA [auth n]50S ribosomal protein L10---
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
50S ribosomal protein L7/L12
BB [auth s]16S ribosomal RNA---
EB [auth v]Peptide chain release factor 3
FB [auth w]messenger RNA---
GB [auth y],
HB [auth z],
IB [auth 7],
JB [auth AA],
KB [auth BA]
Viomycin---
30S ribosomal protein S8---
30S ribosomal protein S9
30S ribosomal protein S10---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR001209Small ribosomal subunit protein uS14Family
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
CA [auth 2]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
CA [auth 2]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth 2]IPR030878Large ribosomal subunit protein uL15Family
CA [auth 2]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
CA [auth 2]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth a]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
JA [auth a]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
JA [auth a]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
JA [auth a]IPR001063Large ribosomal subunit protein uL22Family
JA [auth a]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
LA [auth c]IPR003256Large ribosomal subunit protein uL24Family
LA [auth c]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
LA [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth c]IPR005824KOWDomain
LA [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth c]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
IPR001911Small ribosomal subunit protein bS21Family
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IPR022801Small ribosomal subunit protein uS4Family
VA [auth m]IPR000473Large ribosomal subunit protein bL36Family
VA [auth m]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
AB [auth r],
XA [auth o],
YA [auth p],
ZA [auth q]
IPR000206Large ribosomal subunit protein bL12Family
EB [auth v]IPR032090Peptide chain release factor 3, C-terminalDomain
EB [auth v]IPR000795Translational (tr)-type GTP-binding domainDomain
EB [auth v]IPR041732Peptide chain release factor 3, GTP-binding domainDomain
EB [auth v]IPR031157Tr-type G domain, conserved siteConserved Site
EB [auth v]IPR035647EF-G domain III/V-likeHomologous Superfamily
EB [auth v]IPR004161Translation elongation factor EFTu-like, domain 2Domain
EB [auth v]IPR004548Peptide chain release factor 3Family
EB [auth v]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
EB [auth v]IPR005225Small GTP-binding protein domainDomain
EB [auth v]IPR038467Peptide chain release factor 3, domain III superfamilyHomologous Superfamily
EB [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily