Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6k61a_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
K [auth L]d6k61l_ Membrane and cell surface proteins and peptides Photosystem I reaction center subunit XI, PsaL Photosystem I reaction center subunit XI, PsaL automated matches automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
L [auth M]d6k61m_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit XII of photosystem I reaction centre, PsaM Subunit XII of photosystem I reaction centre, PsaM automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
C [auth B]d6k61b_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
P [auth c]d6k61c_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
Q [auth d]d6k61d_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
F [auth E]d6k61e_ All beta proteins SH3-like barrel Electron transport accessory proteins Photosystem I accessory protein E (PsaE) automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
G [auth F]d6k61f_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF Subunit III of photosystem I reaction centre, PsaF automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)
H [auth J]d6k61j_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ Subunit IX of photosystem I reaction centre, PsaJ automated matches (Nostoc sp. PCC 7120 = FACHB-418 ) [TaxId: 103690 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8094435 3000850 SCOP2B (2022-06-29)
M [auth a]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8094434 4002118 SCOP2 (2022-06-29)
M [auth a]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8094435 3000850 SCOP2 (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8095527 3000870 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8095527 3000870 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre PsaM8094801 3000829 SCOP2B (2022-06-29)
X [auth m]SCOP2B SuperfamilySubunit XII of photosystem I reaction centre PsaM8094801 3000829 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8094389 3000850 SCOP2B (2022-06-29)
O [auth b]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8094388 4002118 SCOP2 (2022-06-29)
O [auth b]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8094389 3000850 SCOP2 (2022-06-29)
D [auth C]SCOP2B Superfamily4Fe-4S ferredoxins8093786 3000020 SCOP2B (2022-06-29)
P [auth c]SCOP2B Superfamily4Fe-4S ferredoxins8093786 3000020 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyPhotosystem I subunit PsaD8094737 3000951 SCOP2B (2022-06-29)
Q [auth d]SCOP2 FamilyPhotosystem I subunit PsaD8094736 4003498 SCOP2 (2022-06-29)
Q [auth d]SCOP2 SuperfamilyPhotosystem I subunit PsaD8094737 3000951 SCOP2 (2022-06-29)
F [auth E]SCOP2B SuperfamilyElectron transport accessory proteins8093812 3000325 SCOP2B (2022-06-29)
R [auth e]SCOP2B SuperfamilyElectron transport accessory proteins8093812 3000325 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilySubunit III of photosystem I reaction centre PsaF8094713 3000813 SCOP2B (2022-06-29)
S [auth f]SCOP2 FamilySubunit III of photosystem I reaction centre PsaF8094712 4002091 SCOP2 (2022-06-29)
S [auth f]SCOP2 SuperfamilySubunit III of photosystem I reaction centre PsaF8094713 3000813 SCOP2 (2022-06-29)
H [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre PsaJ8094669 3000824 SCOP2B (2022-06-29)
T [auth j]SCOP2 FamilySubunit IX of photosystem I reaction centre PsaJ8094668 4002101 SCOP2 (2022-06-29)
T [auth j]SCOP2 SuperfamilySubunit IX of photosystem I reaction centre PsaJ8094669 3000824 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00223e6k61A1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
APF00223e6k61A2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
M [auth a]PF00223e6k61a1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
M [auth a]PF00223e6k61a2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
J [auth I]PF00796e6k61I1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
V [auth i]PF00796e6k61i1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
K [auth L]PF02605e6k61L1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
W [auth l]PF02605e6k61l1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
L [auth M]PF07465e6k61M1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
X [auth m]PF07465e6k61m1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
B [auth X]PF08078e6k61X1 A: extended segmentsX: Subunit PsaX of photosystem I reaction centre (From Topology)H: Subunit PsaX of photosystem I reaction centre (From Topology)T: Subunit PsaX of photosystem I reaction centreF: PF08078ECOD (1.6)
N [auth x]PF08078e6k61x1 A: extended segmentsX: Subunit PsaX of photosystem I reaction centre (From Topology)H: Subunit PsaX of photosystem I reaction centre (From Topology)T: Subunit PsaX of photosystem I reaction centreF: PF08078ECOD (1.6)
C [auth B]PF00223e6k61B2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
C [auth B]PF00223e6k61B1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
O [auth b]PF00223e6k61b1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
O [auth b]PF00223e6k61b2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
D [auth C]PF00037e6k61C1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
P [auth c]PF00037e6k61c1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
E [auth D]PF02531e6k61D1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
Q [auth d]PF02531e6k61d1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
F [auth E]PF02427e6k61E1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
R [auth e]PF02427e6k61e1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
G [auth F]PF02507e6k61F1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
S [auth f]PF02507e6k61f1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PF02507ECOD (1.6)
H [auth J]PF01701e6k61J1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
T [auth j]PF01701e6k61j1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PF01701ECOD (1.6)
I [auth K]PF01241e6k61K1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PF01241ECOD (1.6)
U [auth k]PF01241e6k61k1 A: alpha bundlesX: Photosystem I reaction center subunit X, PsaK (From Topology)H: Photosystem I reaction center subunit X, PsaK (From Topology)T: Photosystem I reaction center subunit X, PsaKF: PF01241ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
M [auth a]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
C [auth B]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
O [auth b]1.20.1130.10 Mainly Alpha Up-down Bundle Photosystem I p700 chlorophyll A apoprotein A1 Photosystem I PsaA/PsaBCATH (utative)
D [auth C]3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
P [auth c]3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (utative)
E [auth D]3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (utative)
Q [auth d]3.30.1470.10 Alpha Beta 2-Layer Sandwich Photosystem 1 Reaction Centre Subunit Ii Chain: DCATH (utative)
F [auth E]2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (utative)
R [auth e]2.30.30.50 Mainly Beta Roll SH3 type barrels. CATH (utative)
G [auth F]1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
S [auth f]1.10.8.110 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
H [auth J]1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (utative)
T [auth j]1.20.5.510 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single helix binCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
M [auth a]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
J [auth I],
V [auth i]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
K [auth L],
W [auth l]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
L [auth M],
X [auth m]
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
B [auth X],
N [auth x]
PF08078PsaX family (PsaX)PsaX family- Family
C [auth B],
O [auth b]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
D [auth C],
P [auth c]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
E [auth D],
Q [auth d]
PF02531PsaD (PsaD)PsaD- Family
F [auth E],
R [auth e]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
G [auth F],
S [auth f]
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
H [auth J],
T [auth j]
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
I [auth K],
U [auth k]
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
M [auth a]
Photosystem I P700 chlorophyll a apoprotein A1
J [auth I],
V [auth i]
Photosystem I reaction center subunit VIII-
K [auth L],
W [auth l]
Photosystem I reaction center subunit XI-
L [auth M],
X [auth m]
Photosystem I reaction center subunit XII-
B [auth X],
N [auth x]
Photosystem I 4.8 kDa protein-
C [auth B],
O [auth b]
Photosystem I P700 chlorophyll a apoprotein A2 1
D [auth C],
P [auth c]
Photosystem I iron-sulfur center
E [auth D],
Q [auth d]
Photosystem I reaction center subunit II-
F [auth E],
R [auth e]
Photosystem I reaction center subunit IV-
G [auth F],
S [auth f]
Photosystem I reaction center subunit III-
H [auth J],
T [auth j]
Photosystem I reaction center subunit IX-
I [auth K],
U [auth k]
Photosystem I reaction center subunit PsaK 1-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
M [auth a]
IPR006243Photosystem I PsaAFamily
A,
M [auth a]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A,
M [auth a]
IPR001280Photosystem I PsaA/PsaBFamily
A,
M [auth a]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
J [auth I],
V [auth i]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
J [auth I],
V [auth i]
IPR001302Photosystem I reaction centre subunit VIIIFamily
K [auth L],
W [auth l]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
K [auth L],
W [auth l]
IPR022980Photosystem I, reaction centre subunit XIFamily
K [auth L],
W [auth l]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
L [auth M],
X [auth m]
IPR010010Photosystem I PsaM, reaction centreFamily
L [auth M],
X [auth m]
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
B [auth X],
N [auth x]
IPR036243Photosystem I PsaX superfamilyHomologous Superfamily
B [auth X],
N [auth x]
IPR012986Photosystem I PsaXFamily
C [auth B],
O [auth b]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
C [auth B],
O [auth b]
IPR001280Photosystem I PsaA/PsaBFamily
C [auth B],
O [auth b]
IPR006244Photosystem I PsaBFamily
C [auth B],
O [auth b]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
D [auth C],
P [auth c]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
D [auth C],
P [auth c]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
D [auth C],
P [auth c]
IPR017491Photosystem I protein PsaCFamily
E [auth D],
Q [auth d]
IPR003685Photosystem I PsaDFamily
E [auth D],
Q [auth d]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
F [auth E],
R [auth e]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
F [auth E],
R [auth e]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
G [auth F],
S [auth f]
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
G [auth F],
S [auth f]
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
H [auth J],
T [auth j]
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
H [auth J],
T [auth j]
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
I [auth K],
U [auth k]
IPR037101Photosystem I reaction centre subunit PsaKHomologous Superfamily
I [auth K],
U [auth k]
IPR000549Photosystem I reaction center subunit V/PsaKFamily
I [auth K],
U [auth k]
IPR035982Photosystem I reaction centre subunit PsaK superfamilyHomologous Superfamily
I [auth K],
U [auth k]
IPR017492Photosystem I reaction center subunit PsaKFamily