6JWP
crystal structure of EGOC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093365 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093367 | 3001810 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093367 | 3001810 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093368 | 3002022 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093370 | 3001810 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8093368 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8093370 | 3001810 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | SNARE-like | 8091556 | 3001113 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | SNARE-like | 8091556 | 3001113 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF04670 | e6jwpB1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04670 | ECOD (1.6) |
B | PF04670 | e6jwpB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04670 | ECOD (1.6) |
G | PF04670 | e6jwpG2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04670 | ECOD (1.6) |
G | PF04670 | e6jwpG1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04670 | ECOD (1.6) |
A | PF04670 | e6jwpA1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04670 | ECOD (1.6) |
A | PF04670 | e6jwpA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04670 | ECOD (1.6) |
F | PF04670 | e6jwpF1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04670 | ECOD (1.6) |
F | PF04670 | e6jwpF2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04670 | ECOD (1.6) |
D | PF11503 | e6jwpD1 | A: a+b three layers | X: Profilin-like | H: YNR034W-A-like (From Topology) | T: YNR034W-A-like | F: PF11503 | ECOD (1.6) |
I | PF11503 | e6jwpI1 | A: a+b three layers | X: Profilin-like | H: YNR034W-A-like (From Topology) | T: YNR034W-A-like | F: PF11503 | ECOD (1.6) |
E | PF16818 | e6jwpE1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF16818 | ECOD (1.6) |
J | PF16818 | e6jwpJ1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF16818 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.450.190 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (utative) | |
F | 3.30.450.190 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (utative) | |
D | 3.40.1840.10 | Alpha Beta | 3-Layer(aba) Sandwich | Profilin-like | YNR034W-A-like | CATH (utative) |
I | 3.40.1840.10 | Alpha Beta | 3-Layer(aba) Sandwich | Profilin-like | YNR034W-A-like | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04670 | Gtr1/RagA G protein conserved region (Gtr1_RagA) | Gtr1/RagA G protein conserved region | GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of ... | Domain | |
PF04670 | Gtr1/RagA G protein conserved region (Gtr1_RagA) | Gtr1/RagA G protein conserved region | GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of ... | Domain | |
PF15454 | Late endosomal/lysosomal adaptor and MAPK and MTOR activator (LAMTOR) | Late endosomal/lysosomal adaptor and MAPK and MTOR activator | - | Family | |
PF11503 | YNR034W-A-like (YNR034W-A-like) | YNR034W-A-like | - | Family | |
PF16818 | Protein SLM4 (SLM4) | Protein SLM4 | The fungal protein SLM4 (EGO3, GSE1) is a component of the GSE complex and the EGO (TOR) complex . The GSE complex is required for trafficking GAP1 out of the endosome [1]. The EGO complex is involved in the regulation of autophagy and cell growth [2 ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR039400 | RagC/D | Family | |
IPR006762 | Gtr1/RagA G protein | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR039397 | RagA/B | Family | |
IPR006762 | Gtr1/RagA G protein | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR028209 | LAMTOR1/MEH1 | Family | |
IPR021591 | YNR034W-A/EGO2 | Family | |
IPR035098 | YNR034W-A/EGO2 superfamily | Homologous Superfamily | |
IPR020233 | GSE/EGO complex subunit Slm4 | Family |