6FWK
The crystal structure of Pol2CORE-M644G in complex with DNA and an incoming nucleotide
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e6fwkA6 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF22634 | e6fwkA4 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: PF22634 | ECOD (1.6) |
A | F_UNCLASSIFIED | e6fwkA3 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e6fwkA5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e6fwkA2 | A: a+b two layers | X: Alpha-beta plaits | H: Family B DNA polymerase insertion domain (From Topology) | T: Family B DNA polymerase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF03104 | e6fwkA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF03104 | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e6fwkB4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | PF22634 | e6fwkB5 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: PF22634 | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e6fwkB6 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e6fwkB3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e6fwkB1 | A: a+b two layers | X: Alpha-beta plaits | H: Family B DNA polymerase insertion domain (From Topology) | T: Family B DNA polymerase insertion domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | PF03104 | e6fwkB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF03104 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF03104 | DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1) | DNA polymerase family B, exonuclease domain | - | Family |
A, D [auth B] | PF00136 | DNA polymerase family B (DNA_pol_B) | DNA polymerase family B | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, D [auth B] | IPR006134 | DNA-directed DNA polymerase, family B, multifunctional domain | Domain |
A, D [auth B] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |
A, D [auth B] | IPR023211 | DNA polymerase, palm domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR006172 | DNA-directed DNA polymerase, family B | Family |
A, D [auth B] | IPR029703 | DNA polymerase epsilon catalytic subunit | Family |
A, D [auth B] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
A, D [auth B] | IPR013697 | DNA polymerase epsilon, catalytic subunit A, C-terminal | Domain |
A, D [auth B] | IPR006133 | DNA-directed DNA polymerase, family B, exonuclease domain | Domain |
A, D [auth B] | IPR042087 | DNA polymerase family B, thumb domain | Homologous Superfamily |