6FEC

Human cap-dependent 48S pre-initiation complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth 6]SCOP2B SuperfamilyWinged helix DNA-binding domain8002864 3000034 SCOP2B (2022-06-29)
F [auth 6]SCOP2B SuperfamilyARM repeat-like8002866 3000116 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2B (2022-06-29)
L [auth G]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2B (2022-06-29)
O [auth J]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052572 3000068 SCOP2B (2022-06-29)
Q [auth L]SCOP2B SuperfamilyS13-like H2TH domain8101555 3000053 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyRibosomal protein S30e-like8053453 3002190 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyWinged helix DNA-binding domain8090992 3000034 SCOP2B (2022-06-29)
CA [auth a]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
HA [auth f]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052791 3001397 SCOP2B (2022-06-29)
JA [auth h]SCOP2B SuperfamilyRibosomal protein S108098806 3001336 SCOP2B (2022-06-29)
KA [auth i]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
NA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins8063426 3000135 SCOP2B (2022-06-29)
SA [auth q]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
TA [auth r]SCOP2B SuperfamilyL30e-like8063978 3001739 SCOP2B (2022-06-29)
M [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082685 3000100 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
N [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyRibosomal protein S78066003 3000799 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyHomeodomain-like8052958 3000001 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyTPR-like8091483 3001345 SCOP2B (2022-06-29)
C [auth 3]SCOP2B SuperfamilyWinged helix DNA-binding domain8091486 3000034 SCOP2B (2022-06-29)
IA [auth g]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8043545 3001043 SCOP2B (2022-06-29)
LA [auth j]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
QA [auth o]SCOP2B Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2B (2022-06-29)
VA [auth t]SCOP2B SuperfamilyWinged helix DNA-binding domain8055714 3000034 SCOP2B (2022-06-29)
WA [auth u]SCOP2B SuperfamilyRNA-binding domain RBD8043568 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth 4]JAB_1e6fec42 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
D [auth 4]MitMem_rege6fec41 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
F [auth 6]CSN8_PSD8_EIF3K_Ce6fec62 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_CECOD (1.6)
F [auth 6]SAC3_GANP_1ste6fec61 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
L [auth G]Ribosomal_S17_1e6fecG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
O [auth J]Ribosomal_S14_2e6fecJ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
P [auth K]S4e6fecK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
Q [auth L]Ribosomal_S13e6fecL1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
T [auth Q]Ribosom_S12_S23e6fecQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
U [auth R]Ribosomal_S19ee6fecR1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
X [auth V]Ribosomal_S30e6fecV1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
Y [auth W]Ribosomal_S25e6fecW1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
Z [auth X]Ribosomal_S7e_Ne6fecX2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
Z [auth X]Ribosomal_S7e_C_1e6fecX1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
AA [auth Y]Ribosomal_S27ee6fecY1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
CA [auth a]Ribosomal_S8_N_1e6feca1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
CA [auth a]Ribosomal_S8_C_1e6feca2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
DA [auth b]Ribosomal_S21ee6fecb1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
HA [auth f]Ribosomal_S2_2e6fecf1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
JA [auth h]Ribosomal_S10_1e6fech1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
KA [auth i]Ribosomal_S3Ae_Ne6feci1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
KA [auth i]Ribosomal_S3Ae_Ce6feci2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
NA [auth l]Ribosomal_S28ee6fecl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
SA [auth q]Ribosomal_S6ee6fecq1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
TA [auth r]Ribosomal_L7Aee6fecr1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
UA [auth s]Ribosomal_S24ee6fecs1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
M [auth H]Ribosomal_S9e6fecH1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
N [auth I]Ribosomal_S4ee6fecI2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
N [auth I]40S_S4_Ce6fecI1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
N [auth I]RS4NTe6fecI3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
S [auth P]S1_1e6fecP2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
S [auth P]EIF_2_alpha_Ne6fecP1 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
S [auth P]EIF_2_alpha_Ce6fecP3 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
V [auth S]GTP_EFTU_D2_2e6fecS3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
V [auth S]eIF2_Ce6fecS1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
V [auth S]MnmE_helical_2nde6fecS4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
V [auth S]KOG0466e6fecS2 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG0466ECOD (1.6)
W [auth U]Ribosomal_S7_1e6fecU1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
BA [auth Z]Ribosomal_S13_Ne6fecZ1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
BA [auth Z]Ribosomal_S15_2e6fecZ2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
C [auth 3]PCIe6fec32 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
C [auth 3]eIF3_Ne6fec31 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF3_NECOD (1.6)
C [auth 3]KOG2758e6fec33 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG2758ECOD (1.6)
EA [auth c]Ribosomal_S5_C_1e6fecc3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
EA [auth c]Ribosomal_S5_3e6fecc2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
EA [auth c]Ribosomal_S5_2e6fecc1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
GA [auth e]Ribosomal_S17ee6fece1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
IA [auth g]Ribosomal_S3_Ce6fecg2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
IA [auth g]KH_2_3e6fecg1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
LA [auth j]Ribosomal_S11e6fecj1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
MA [auth k]Ribosomal_S26ee6feck1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
OA [auth m]DUF1899e6fecm1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
PA [auth n]Ribosomal_S19e6fecn1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
QA [auth o]Ribosomal_S8ee6feco1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
RA [auth p]Ribosomal_S27e6fecp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
VA [auth t]S10_plectine6fect1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
WA [auth u]RRM_1_4e6fecu1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_4ECOD (1.6)
E [auth 5]JAB_1e6fec51 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
E [auth 5]KOG1560e6fec52 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: KOG1560ECOD (1.6)
I [auth 9]eIF-3_zetae6fec91 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: eIF-3_zetaECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth 6]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
H [auth 8]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].Domain
H [auth 8]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
L [auth G]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth G]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
O [auth J]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
P [auth K]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
P [auth K]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
Q [auth L]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
T [auth Q]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
X [auth V]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
Y [auth W]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
Z [auth X]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
AA [auth Y]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
CA [auth a]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
HA [auth f]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
HA [auth f]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
JA [auth h]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
KA [auth i]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
NA [auth l]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
SA [auth q]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
TA [auth r]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
UA [auth s]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
M [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
N [auth I]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
N [auth I]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
N [auth I]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
N [auth I]PF00467KOW motif (KOW)KOW motif- Family
V [auth S]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
V [auth S]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
V [auth S]PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1].Domain
W [auth U]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
BA [auth Z]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
BA [auth Z]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
C [auth 3]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3.Domain
C [auth 3]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].Domain
C [auth 3]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
GA [auth e]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
IA [auth g]PF07650KH domain (KH_2)KH domain- Domain
IA [auth g]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
LA [auth j]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
OA [auth m]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PA [auth n]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
QA [auth o]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
RA [auth p]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
VA [auth t]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
WA [auth u]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
G [auth 7]PF10255RNA polymerase I-associated factor PAF67 (Paf67)RNA polymerase I-associated factor PAF67- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 2]Eukaryotic translation initiation factor 3 subunit C---
D [auth 4]Eukaryotic translation initiation factor 3 subunit F---
F [auth 6]Eukaryotic translation initiation factor 3 subunit K
H [auth 8]Eukaryotic translation initiation factor 3 subunit M
L [auth G]40S ribosomal protein S11
O [auth J]40S ribosomal protein S29
P [auth K]40S ribosomal protein S9
Q [auth L]40S ribosomal protein S18
R [auth N]Transfer RNA (75-MER)---
T [auth Q]40S ribosomal protein S23
U [auth R]40S ribosomal protein S19---
X [auth V]40S ribosomal protein S30
Y [auth W]40S ribosomal protein S25
Z [auth X]40S ribosomal protein S7
AA [auth Y]40S ribosomal protein S27
CA [auth a]40S ribosomal protein S15a
DA [auth b]40S ribosomal protein S21---
HA [auth f]40S ribosomal protein SA
JA [auth h]40S ribosomal protein S20
KA [auth i]40S ribosomal protein S3a
NA [auth l]40S ribosomal protein S28
SA [auth q]40S ribosomal protein S6
TA [auth r]40S ribosomal protein S12
UA [auth s]40S ribosomal protein S24
A [auth 1]Eukaryotic translation initiation factor 3 subunit A---
J [auth A]18S ribosomal RNA---
K [auth F]Messenger RNA (26-MER)---
M [auth H]40S ribosomal protein S16
N [auth I]40S ribosomal protein S4, X isoform
S [auth P]Eukaryotic translation initiation factor 2 subunit 1---
V [auth S]Eukaryotic translation initiation factor 2 subunit 3
W [auth U]40S ribosomal protein S5
BA [auth Z]40S ribosomal protein S13
C [auth 3]Eukaryotic translation initiation factor 3 subunit E
EA [auth c]40S ribosomal protein S2---
FA [auth d]EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT (eIF2-Beta)---
GA [auth e]40S ribosomal protein S17
IA [auth g]40S ribosomal protein S3
LA [auth j]40S ribosomal protein S14
MA [auth k]40S ribosomal protein S26---
OA [auth m]Receptor of activated protein C kinase 1
PA [auth n]40S ribosomal protein S15
QA [auth o]40S ribosomal protein S8
RA [auth p]Ubiquitin-40S ribosomal protein S27a
VA [auth t]40S ribosomal protein S10
WA [auth u]Eukaryotic translation initiation factor 4B
E [auth 5]Eukaryotic translation initiation factor 3 subunit H---
XA [auth w]Eukaryotic translation initiation factor 3 subunit B---
G [auth 7]Eukaryotic translation initiation factor 3 subunit L
I [auth 9]EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT D---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth 6]IPR016024Armadillo-type foldHomologous Superfamily
F [auth 6]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR033464CSN8/PSMD8/EIF3KDomain
F [auth 6]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
F [auth 6]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
F [auth 6]IPR000717Proteasome component (PCI) domainDomain
F [auth 6]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
H [auth 8]IPR016024Armadillo-type foldHomologous Superfamily
H [auth 8]IPR040750eIF3 subunit M, C-terminal helix domainDomain
H [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
H [auth 8]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
H [auth 8]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
H [auth 8]IPR000717Proteasome component (PCI) domainDomain
L [auth G]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
L [auth G]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
L [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth G]IPR000266Small ribosomal subunit protein uS17Family
L [auth G]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
O [auth J]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
O [auth J]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
O [auth J]IPR001209Small ribosomal subunit protein uS14Family
O [auth J]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
P [auth K]IPR002942RNA-binding S4 domainDomain
P [auth K]IPR022801Small ribosomal subunit protein uS4Family
P [auth K]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
P [auth K]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
P [auth K]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
P [auth K]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
Q [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Q [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Q [auth L]IPR001892Small ribosomal subunit protein uS13Family
Q [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
T [auth Q]IPR006032Small ribosomal subunit protein uS12Family
T [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth Q]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
X [auth V]IPR019954Ubiquitin conserved siteConserved Site
X [auth V]IPR000626Ubiquitin-like domainDomain
X [auth V]IPR006846Small ribosomal subunit protein eS30Family
X [auth V]IPR039415Ubiquitin-like protein FUBIDomain
X [auth V]IPR019956Ubiquitin domainDomain
X [auth V]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
Y [auth W]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Y [auth W]IPR004977Small ribosomal subunit protein eS25Family
Z [auth X]IPR000554Small ribosomal subunit protein eS7Family
Z [auth X]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
AA [auth Y]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
AA [auth Y]IPR000592Small ribosomal subunit protein eS27Family
AA [auth Y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth a]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
CA [auth a]IPR000630Small ribosomal subunit protein uS8Family
CA [auth a]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
HA [auth f]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
HA [auth f]IPR001865Small ribosomal subunit protein uS2Family
HA [auth f]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
HA [auth f]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
HA [auth f]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
HA [auth f]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
HA [auth f]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
JA [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
JA [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
JA [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
JA [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
JA [auth h]IPR001848Small ribosomal subunit protein uS10Family
KA [auth i]IPR001593Small ribosomal subunit protein eS1Family
KA [auth i]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
KA [auth i]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
NA [auth l]IPR028626Ribosomal protein eS28 conserved siteConserved Site
NA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
NA [auth l]IPR000289Small ribosomal subunit protein eS28Family
SA [auth q]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
SA [auth q]IPR001377Small ribosomal subunit protein eS6Family
SA [auth q]IPR014401Small ribosomal subunit protein eS6-likeFamily
TA [auth r]IPR000530Small ribosomal subunit protein eS12Family
TA [auth r]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
TA [auth r]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
TA [auth r]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
UA [auth s]IPR001976Small ribosomal subunit protein eS24Family
UA [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
UA [auth s]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
M [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
M [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
M [auth H]IPR000754Small ribosomal subunit protein uS9Family
M [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
N [auth I]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
N [auth I]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
N [auth I]IPR013845Small ribosomal subunit protein eS4, central regionDomain
N [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth I]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
N [auth I]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
N [auth I]IPR002942RNA-binding S4 domainDomain
N [auth I]IPR000876Small ribosomal subunit protein eS4Family
N [auth I]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
N [auth I]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
N [auth I]IPR005824KOWDomain
V [auth S]IPR000795Translational (tr)-type GTP-binding domainDomain
V [auth S]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
V [auth S]IPR004161Translation elongation factor EFTu-like, domain 2Domain
V [auth S]IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
V [auth S]IPR015256Initiation factor eIF2 gamma, C-terminalDomain
V [auth S]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth S]IPR044127Initiation factor eIF2 gamma, domain 2Domain
V [auth S]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
W [auth U]IPR023798Small ribosomal subunit protein uS7 domainDomain
W [auth U]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
W [auth U]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
W [auth U]IPR000235Small ribosomal subunit protein uS7Family
W [auth U]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
BA [auth Z]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
BA [auth Z]IPR000589Small ribosomal subunit protein uS15Family
BA [auth Z]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
BA [auth Z]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
C [auth 3]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
C [auth 3]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
C [auth 3]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
C [auth 3]IPR000717Proteasome component (PCI) domainDomain
GA [auth e]IPR001210Small ribosomal subunit protein eS17Family
GA [auth e]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
GA [auth e]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
IA [auth g]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IA [auth g]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IA [auth g]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IA [auth g]IPR004044K Homology domain, type 2Domain
IA [auth g]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IA [auth g]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
IA [auth g]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
LA [auth j]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
LA [auth j]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
LA [auth j]IPR001971Small ribosomal subunit protein uS11Family
OA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth m]IPR045223Small ribosomal subunit protein RACK1-likeFamily
OA [auth m]IPR020472G-protein beta WD-40 repeatRepeat
OA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth m]IPR001680WD40 repeatRepeat
PA [auth n]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
PA [auth n]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
PA [auth n]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
PA [auth n]IPR002222Small ribosomal subunit protein uS19Family
QA [auth o]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
QA [auth o]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
QA [auth o]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
QA [auth o]IPR001047Small ribosomal subunit protein eS8Family
RA [auth p]IPR019954Ubiquitin conserved siteConserved Site
RA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RA [auth p]IPR000626Ubiquitin-like domainDomain
RA [auth p]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
RA [auth p]IPR002906Small ribosomal subunit protein eS31Domain
RA [auth p]IPR019956Ubiquitin domainDomain
RA [auth p]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
VA [auth t]IPR037447Small ribosomal subunit protein eS10Family
VA [auth t]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
VA [auth t]IPR005326Plectin/eS10, N-terminalDomain
WA [auth u]IPR033107Eukaryotic translation initiation factor 4B, RNA recognition motifDomain
WA [auth u]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
WA [auth u]IPR000504RNA recognition motif domainDomain
WA [auth u]IPR035979RNA-binding domain superfamilyHomologous Superfamily
G [auth 7]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth 7]IPR000717Proteasome component (PCI) domainDomain
G [auth 7]IPR019382Translation initiation factor 3 complex subunit LFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth 6]PharosQ9UBQ5
H [auth 8]PharosQ7L2H7
L [auth G]PharosP62280
O [auth J]PharosP62273
P [auth K]PharosP46781
Q [auth L]PharosP62269
T [auth Q]PharosP62266
X [auth V]PharosP62861
Y [auth W]PharosP62851
Z [auth X]PharosP62081
AA [auth Y]PharosP42677
CA [auth a]PharosP62244
HA [auth f]PharosP08865
JA [auth h]PharosP60866
NA [auth l]PharosP62857
SA [auth q]PharosP62753
TA [auth r]PharosP25398
UA [auth s]PharosP62847
M [auth H]PharosP62249
N [auth I]PharosP62701
V [auth S]PharosP41091
W [auth U]PharosP46782
BA [auth Z]PharosP62277
C [auth 3]PharosP60228
GA [auth e]PharosP08708
IA [auth g]PharosP23396
LA [auth j]PharosP62263
OA [auth m]PharosP63244
PA [auth n]PharosP62841
QA [auth o]PharosP62241
RA [auth p]PharosP62979
VA [auth t]PharosP46783
WA [auth u]PharosP23588