6ERI

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth AK]SCOP2B Superfamily50S Ribosomal protein L14-like8072036 3000433 SCOP2B (2022-06-29)
K [auth AL]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070567 3001045 SCOP2B (2022-06-29)
L [auth AM]SCOP2 FamilyRibosomal protein L16p8076046 4003717 SCOP2 (2022-06-29)
L [auth AM]SCOP2 SuperfamilyRibosomal protein L16p/L10e8076047 3000884 SCOP2 (2022-06-29)
M [auth AN]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089018 3000995 SCOP2B (2022-06-29)
N [auth AO]SCOP2B SuperfamilyTranslational machinery components8074012 3000571 SCOP2B (2022-06-29)
O [auth AP]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8089130 3000334 SCOP2B (2022-06-29)
P [auth AQ]SCOP2B SuperfamilyRibosomal protein L208075018 3000563 SCOP2B (2022-06-29)
Q [auth AR]SCOP2B Superfamilyl21p-like8082449 3002005 SCOP2B (2022-06-29)
S [auth AT]SCOP2 FamilyL23p8077090 4000943 SCOP2 (2022-06-29)
S [auth AT]SCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8077091 3000210 SCOP2 (2022-06-29)
T [auth AU]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082517 3000334 SCOP2B (2022-06-29)
V [auth AX]SCOP2B SuperfamilyL28p-like8089408 3001966 SCOP2B (2022-06-29)
Z [auth Ab]SCOP2B SuperfamilyZn-binding ribosomal proteins8075064 3001320 SCOP2B (2022-06-29)
BA [auth Ad]SCOP2B SuperfamilyL35p-like8083340 3000790 SCOP2B (2022-06-29)
CA [auth Ae]SCOP2B SuperfamilyRibosomal protein L368083320 3001346 SCOP2B (2022-06-29)
IA [auth BB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8098310 3001397 SCOP2B (2022-06-29)
KA [auth BD]SCOP2 FamilyRibosomal protein S48083403 4001399 SCOP2 (2022-06-29)
KA [auth BD]SCOP2 SuperfamilyAlpha-L RNA-binding motif8083404 3001473 SCOP2 (2022-06-29)
D [auth AD]SCOP2B SuperfamilyTranslational proteins8089154 3000811 SCOP2B (2022-06-29)
NA [auth BG]SCOP2B SuperfamilyRibosomal protein S78077983 3000799 SCOP2B (2022-06-29)
OA [auth BH]SCOP2 FamilyRibosomal protein S88079062 4002027 SCOP2 (2022-06-29)
OA [auth BH]SCOP2 SuperfamilyRibosomal protein S88079063 3000709 SCOP2 (2022-06-29)
PA [auth BI]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082673 3000100 SCOP2B (2022-06-29)
QA [auth BJ]SCOP2B SuperfamilyRibosomal protein S108098942 3001336 SCOP2B (2022-06-29)
RA [auth BK]SCOP2B SuperfamilyTranslational machinery components8098296 3000571 SCOP2B (2022-06-29)
SA [auth BL]SCOP2B SuperfamilyNucleic acid-binding proteins8098842 3000135 SCOP2B (2022-06-29)
TA [auth BM]SCOP2 FamilyRibosomal protein S138098943 4000260 SCOP2 (2022-06-29)
TA [auth BM]SCOP2 SuperfamilyS13-like H2TH domain8098944 3000053 SCOP2 (2022-06-29)
UA [auth BN]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052598 3000068 SCOP2B (2022-06-29)
VA [auth BO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8072637 3001284 SCOP2B (2022-06-29)
WA [auth BP]SCOP2B SuperfamilyRibosomal protein S168066569 3000680 SCOP2B (2022-06-29)
E [auth AE]SCOP2B SuperfamilyRibosomal protein L48080708 3001146 SCOP2B (2022-06-29)
XA [auth BQ]SCOP2 FamilyCold shock DNA-binding domain-like8059281 4001909 SCOP2 (2022-06-29)
XA [auth BQ]SCOP2 SuperfamilyNucleic acid-binding proteins8059282 3000135 SCOP2 (2022-06-29)
ZA [auth BS]SCOP2B SuperfamilyRibosomal protein S198086060 3000686 SCOP2B (2022-06-29)
BB [auth BU]SCOP2 FamilyRibosomal protein S218060182 4006173 SCOP2 (2022-06-29)
BB [auth BU]SCOP2 SuperfamilyRibosomal protein S218060183 3002159 SCOP2 (2022-06-29)
CB [auth BV]SCOP2 FamilyYfiA-like8076006 4003461 SCOP2 (2022-06-29)
CB [auth BV]SCOP2 SuperfamilyYfiA/CsgE-like8076007 3000912 SCOP2 (2022-06-29)
F [auth AF]SCOP2B SuperfamilyRL5-like8073876 3001709 SCOP2B (2022-06-29)
H [auth AH]SCOP2B SuperfamilyL9 N-domain-like8070581 3000338 SCOP2B (2022-06-29)
I [auth AJ]SCOP2B SuperfamilyRibosomal protein L138066065 3001134 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth AK]PF00238e6eriAK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
K [auth AL]PF00828e6eriAL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
L [auth AM]PF00252e6eriAM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
M [auth AN]PF01196e6eriAN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
N [auth AO]PF00861e6eriAO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
O [auth AP]PF01245e6eriAP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
P [auth AQ]PF00453e6eriAQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
Q [auth AR]PF00829e6eriAR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
R [auth AS]PF00237e6eriAS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
S [auth AT]PF00276e6eriAT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
T [auth AU]PF00467,PF17136e6eriAU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
U [auth AW]PF01016e6eriAW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
V [auth AX]PF00830e6eriAX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
W [auth AY]PF00831e6eriAY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
X [auth AZ]PF01197e6eriAZ1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
Y [auth Aa]F_UNCLASSIFIEDe6eriAa1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
Z [auth Ab]PF00471e6eriAb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
AA [auth Ac]PF00468e6eriAc1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
BA [auth Ad]PF01632e6eriAd1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
CA [auth Ae]PF00444e6eriAe1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
C [auth AC]PF00181e6eriAC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
C [auth AC]PF03947e6eriAC2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
GA [auth Az]PF01765e6eriAz1 A: a+b two layersX: RRF/tRNA synthetase additional domain-likeH: Ribosome recycling factor, RRF (From Topology)T: Ribosome recycling factor, RRFF: PF01765ECOD (1.6)
IA [auth BB]PF00318e6eriBB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
JA [auth BC]PF00189e6eriBC1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
JA [auth BC]F_UNCLASSIFIEDe6eriBC2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: F_UNCLASSIFIEDECOD (1.6)
KA [auth BD]PF00163,PF01479e6eriBD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
LA [auth BE]PF03719e6eriBE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
LA [auth BE]PF00333e6eriBE1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
MA [auth BF]PF01250e6eriBF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
D [auth AD]PF00297e6eriAD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
NA [auth BG]PF00177e6eriBG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
OA [auth BH]PF00410e6eriBH1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
OA [auth BH]PF00410e6eriBH2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
PA [auth BI]PF00380e6eriBI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
QA [auth BJ]PF00338e6eriBJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
RA [auth BK]PF00411e6eriBK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
SA [auth BL]PF00164e6eriBL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
TA [auth BM]PF00416e6eriBM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
UA [auth BN]PF00253e6eriBN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
VA [auth BO]PF00312e6eriBO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
WA [auth BP]PF00886e6eriBP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
E [auth AE]PF00573e6eriAE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
XA [auth BQ]PF00366e6eriBQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
YA [auth BR]PF01084e6eriBR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
ZA [auth BS]PF00203e6eriBS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
AB [auth BT]PF01649e6eriBT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
BB [auth BU]PF01165e6eriBU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
CB [auth BV]PF02482e6eriBV1 A: a+b two layersX: dsRBD-likeH: Ribosome binding protein Y (YfiA homologue) (From Topology)T: Ribosome binding protein Y (YfiA homologue)F: PF02482ECOD (1.6)
F [auth AF]PF00281,PF00673e6eriAF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
G [auth AG]PF00347e6eriAG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
H [auth AH]PF01281e6eriAH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
I [auth AJ]PF00572e6eriAJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth AK]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
K [auth AL]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
L [auth AM]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth AN]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
N [auth AO]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
O [auth AP]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
P [auth AQ]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
Q [auth AR]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
R [auth AS]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
S [auth AT]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
T [auth AU]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
T [auth AU]PF00467KOW motif (KOW)KOW motif- Family
U [auth AW]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
V [auth AX]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
W [auth AY]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
X [auth AZ]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
Z [auth Ab]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
AA [auth Ac]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BA [auth Ad]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
CA [auth Ae]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
C [auth AC]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
C [auth AC]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
DA [auth Af]PF17257Family of unknown function (DUF5323) (DUF5323)Family of unknown function (DUF5323)- Family
GA [auth Az]PF01765Ribosome recycling factor (RRF)Ribosome recycling factorThe ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ...The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Domain
IA [auth BB]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
JA [auth BC]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
KA [auth BD]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
KA [auth BD]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
LA [auth BE]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
LA [auth BE]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
MA [auth BF]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
D [auth AD]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
NA [auth BG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
OA [auth BH]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PA [auth BI]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
QA [auth BJ]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
RA [auth BK]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
SA [auth BL]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
TA [auth BM]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
UA [auth BN]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
VA [auth BO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
WA [auth BP]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
E [auth AE]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
XA [auth BQ]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
YA [auth BR]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
ZA [auth BS]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
AB [auth BT]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
BB [auth BU]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
CB [auth BV]PF02482Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE)Sigma 54 modulation protein / S30EA ribosomal protein- Family
DB [auth BW]PF17067Ribosomal protein S31e (RPS31)Ribosomal protein S31e- Family
F [auth AF]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
F [auth AF]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
G [auth AG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
H [auth AH]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
I [auth AJ]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]23S ribosomal RNA---
J [auth AK]50S ribosomal protein L14, chloroplastic
K [auth AL]50S ribosomal protein L15, chloroplastic
L [auth AM]50S ribosomal protein L16, chloroplastic
M [auth AN]50S ribosomal protein L17, chloroplastic
N [auth AO]50S ribosomal protein L18, chloroplastic
O [auth AP]50S ribosomal protein L19, chloroplastic
P [auth AQ]50S ribosomal protein L20, chloroplastic
Q [auth AR]50S ribosomal protein L21, chloroplastic
R [auth AS]50S ribosomal protein L22, chloroplastic
S [auth AT]50S ribosomal protein L23, chloroplastic
B [auth AB]4.5S ribosomal RNA---
T [auth AU]50S ribosomal protein L24, chloroplastic
U [auth AW]50S ribosomal protein L27, chloroplastic
V [auth AX]50S ribosomal protein L28, chloroplastic
W [auth AY]50S ribosomal protein L29, chloroplastic
X [auth AZ]50S ribosomal protein L31, chloroplastic
Y [auth Aa]50S ribosomal protein L32, chloroplastic
Z [auth Ab]50S ribosomal protein L33, chloroplastic
AA [auth Ac]50S ribosomal protein L34, chloroplastic
BA [auth Ad]50S ribosomal protein L35, chloroplastic
CA [auth Ae]50S ribosomal protein L36, chloroplastic
C [auth AC]50S ribosomal protein L2, chloroplastic
DA [auth Af]50S ribosomal protein 6, chloroplastic
EA [auth Aw]50S ribosomal protein 5 alpha, chloroplastic
FA [auth Ax]5S ribosomal RNA---
GA [auth Az]Ribosome-recycling factor, chloroplastic-
HA [auth BA]16S ribosomal RNA---
IA [auth BB]30S ribosomal protein S2, chloroplastic
JA [auth BC]30S ribosomal protein S3, chloroplastic
KA [auth BD]30S ribosomal protein S4, chloroplastic
LA [auth BE]30S ribosomal protein S5, chloroplastic
MA [auth BF]30S ribosomal protein S6 alpha, chloroplastic
D [auth AD]50S ribosomal protein L3, chloroplastic
NA [auth BG]30S ribosomal protein S7, chloroplastic
OA [auth BH]30S ribosomal protein S8, chloroplastic
PA [auth BI]30S ribosomal protein S9, chloroplastic
QA [auth BJ]30S ribosomal protein S10 alpha, chloroplastic
RA [auth BK]30S ribosomal protein S11, chloroplastic
SA [auth BL]30S ribosomal protein S12, chloroplastic
TA [auth BM]30S ribosomal protein S13, chloroplastic
UA [auth BN]30S ribosomal protein S14, chloroplastic
VA [auth BO]30S ribosomal protein S15, chloroplastic
WA [auth BP]30S ribosomal protein S16, chloroplastic
E [auth AE]50S ribosomal protein L4, chloroplastic
XA [auth BQ]30S ribosomal protein S17, chloroplastic
YA [auth BR]30S ribosomal protein S18, chloroplastic
ZA [auth BS]30S ribosomal protein S19, chloroplastic
AB [auth BT]30S ribosomal protein S20, chloroplastic
BB [auth BU]30S ribosomal protein S21, chloroplastic
CB [auth BV]Ribosome-binding factor PSRP1, chloroplastic
DB [auth BW]30S ribosomal protein S31, chloroplastic
EB [auth BY]bS1c---
F [auth AF]50S ribosomal protein L5, chloroplastic
G [auth AG]50S ribosomal protein L6, chloroplastic
H [auth AH]50S ribosomal protein L9, chloroplastic
I [auth AJ]50S ribosomal protein L13, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth AK]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
J [auth AK]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth AK]IPR000218Large ribosomal subunit protein uL14Family
J [auth AK]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
K [auth AL]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
K [auth AL]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth AL]IPR030878Large ribosomal subunit protein uL15Family
K [auth AL]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
K [auth AL]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth AM]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth AM]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
L [auth AM]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
L [auth AM]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth AM]IPR047873Large ribosomal subunit protein uL16Family
M [auth AN]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth AN]IPR000456Large ribosomal subunit protein bL17Family
N [auth AO]IPR005484Large ribosomal subunit protein uL18Family
N [auth AO]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
O [auth AP]IPR001857Large ribosomal subunit protein bL19Family
O [auth AP]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
O [auth AP]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth AQ]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
P [auth AQ]IPR005813Large ribosomal subunit protein bL20Family
Q [auth AR]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth AR]IPR001787Large ribosomal subunit protein bL21Family
Q [auth AR]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Q [auth AR]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
R [auth AS]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
R [auth AS]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth AS]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth AS]IPR001063Large ribosomal subunit protein uL22Family
R [auth AS]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
S [auth AT]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth AT]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth AT]IPR013025Large ribosomal subunit protein uL23-likeFamily
T [auth AU]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth AU]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth AU]IPR003256Large ribosomal subunit protein uL24Family
T [auth AU]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth AU]IPR005824KOWDomain
T [auth AU]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
U [auth AW]IPR001684Large ribosomal subunit protein bL27Family
U [auth AW]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
V [auth AX]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
V [auth AX]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
V [auth AX]IPR026569Large ribosomal subunit protein bL28Family
V [auth AX]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
W [auth AY]IPR001854Large ribosomal subunit protein uL29Family
W [auth AY]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth AZ]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
X [auth AZ]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
X [auth AZ]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Y [auth Aa]IPR002677Large ribosomal subunit protein bL32Family
Y [auth Aa]IPR044958Large ribosomal subunit protein bL32, plant/cyanobacteria typeFamily
Y [auth Aa]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth Ab]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth Ab]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Z [auth Ab]IPR001705Large ribosomal subunit protein bL33Family
Z [auth Ab]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
AA [auth Ac]IPR000271Large ribosomal subunit protein bL34Family
BA [auth Ad]IPR021137Large ribosomal subunit protein bL35-likeFamily
BA [auth Ad]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
BA [auth Ad]IPR001706Large ribosomal subunit protein bL35Family
BA [auth Ad]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
CA [auth Ae]IPR000473Large ribosomal subunit protein bL36Family
CA [auth Ae]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
C [auth AC]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth AC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth AC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth AC]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth AC]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth AC]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth AC]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth AC]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth AC]IPR002171Large ribosomal subunit protein uL2Family
DA [auth Af]IPR020526Large ribosomal subunit protein cL38Family
EA [auth Aw]IPR040307Large ribosomal subunit protein cL37Family
GA [auth Az]IPR023584Ribosome recycling factor domainDomain
GA [auth Az]IPR036191RRF superfamilyHomologous Superfamily
GA [auth Az]IPR002661Ribosome recycling factorFamily
IA [auth BB]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IA [auth BB]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IA [auth BB]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IA [auth BB]IPR001865Small ribosomal subunit protein uS2Family
JA [auth BC]IPR004044K Homology domain, type 2Domain
JA [auth BC]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
JA [auth BC]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
JA [auth BC]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
JA [auth BC]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
JA [auth BC]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
JA [auth BC]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
KA [auth BD]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
KA [auth BD]IPR002942RNA-binding S4 domainDomain
KA [auth BD]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
KA [auth BD]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
KA [auth BD]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
KA [auth BD]IPR022801Small ribosomal subunit protein uS4Family
LA [auth BE]IPR000851Small ribosomal subunit protein uS5Family
LA [auth BE]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
LA [auth BE]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
LA [auth BE]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
LA [auth BE]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
LA [auth BE]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
LA [auth BE]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
MA [auth BF]IPR000529Small ribosomal subunit protein bS6Family
MA [auth BF]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
MA [auth BF]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
MA [auth BF]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
D [auth AD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth AD]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth AD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth AD]IPR000597Large ribosomal subunit protein uL3Family
NA [auth BG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
NA [auth BG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
NA [auth BG]IPR000235Small ribosomal subunit protein uS7Family
NA [auth BG]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
NA [auth BG]IPR023798Small ribosomal subunit protein uS7 domainDomain
OA [auth BH]IPR000630Small ribosomal subunit protein uS8Family
OA [auth BH]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
OA [auth BH]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
PA [auth BI]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
PA [auth BI]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
PA [auth BI]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth BI]IPR000754Small ribosomal subunit protein uS9Family
PA [auth BI]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth BJ]IPR001848Small ribosomal subunit protein uS10Family
QA [auth BJ]IPR027486Small ribosomal subunit protein uS10 domainDomain
QA [auth BJ]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
QA [auth BJ]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
RA [auth BK]IPR001971Small ribosomal subunit protein uS11Family
RA [auth BK]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
RA [auth BK]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
RA [auth BK]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
SA [auth BL]IPR006032Small ribosomal subunit protein uS12Family
SA [auth BL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SA [auth BL]IPR005679Ribosomal protein uS12, bacterial-typeFamily
TA [auth BM]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
TA [auth BM]IPR001892Small ribosomal subunit protein uS13Family
TA [auth BM]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
TA [auth BM]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
UA [auth BN]IPR001209Small ribosomal subunit protein uS14Family
UA [auth BN]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
UA [auth BN]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
VA [auth BO]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
VA [auth BO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
VA [auth BO]IPR000589Small ribosomal subunit protein uS15Family
WA [auth BP]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
WA [auth BP]IPR000307Small ribosomal subunit protein bS16Family
WA [auth BP]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
E [auth AE]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth AE]IPR002136Large ribosomal subunit protein uL4Family
E [auth AE]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
XA [auth BQ]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
XA [auth BQ]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
XA [auth BQ]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
XA [auth BQ]IPR000266Small ribosomal subunit protein uS17Family
YA [auth BR]IPR001648Small ribosomal subunit protein bS18Family
YA [auth BR]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
YA [auth BR]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
ZA [auth BS]IPR002222Small ribosomal subunit protein uS19Family
ZA [auth BS]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
ZA [auth BS]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
ZA [auth BS]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
AB [auth BT]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
AB [auth BT]IPR002583Small ribosomal subunit protein bS20Family
BB [auth BU]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
BB [auth BU]IPR001911Small ribosomal subunit protein bS21Family
CB [auth BV]IPR003489Ribosome hibernation promoting factor/RaiAFamily
CB [auth BV]IPR034694Ribosome hibernation promoting factor, long/plastidFamily
CB [auth BV]IPR036567Ribosome hibernation promotion factor-likeHomologous Superfamily
CB [auth BV]IPR032528Sigma 54 modulation/S30EA ribosomal protein, C-terminalDomain
CB [auth BV]IPR038416Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamilyHomologous Superfamily
DB [auth BW]IPR044695Small ribosomal subunit protein bTHXc/bTHXc, plantFamily
DB [auth BW]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
F [auth AF]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
F [auth AF]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth AF]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth AF]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth AF]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
F [auth AF]IPR002132Large ribosomal subunit protein uL5Family
G [auth AG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth AG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth AG]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth AG]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
G [auth AG]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
H [auth AH]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
H [auth AH]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
H [auth AH]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
H [auth AH]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
H [auth AH]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
H [auth AH]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
H [auth AH]IPR000244Large ribosomal subunit protein bL9Family
I [auth AJ]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth AJ]IPR005822Large ribosomal subunit protein uL13Family
I [auth AJ]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
I [auth AJ]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily