6CRI
Structure of the cargo bound AP-1:Arf1:tetherin-Nef stable closed trimer
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | ARM repeat-like | 8082787 | 3000116 | SCOP2B (2022-06-29) |
J [auth I] | SCOP2B Superfamily | ARM repeat-like | 8082787 | 3000116 | SCOP2B (2022-06-29) |
R [auth J] | SCOP2B Superfamily | ARM repeat-like | 8082787 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
M [auth U] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
U [auth V] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | ARM repeat-like | 8078176 | 3000116 | SCOP2B (2022-06-29) |
L [auth Q] | SCOP2B Superfamily | ARM repeat-like | 8078176 | 3000116 | SCOP2B (2022-06-29) |
T [auth R] | SCOP2B Superfamily | ARM repeat-like | 8078176 | 3000116 | SCOP2B (2022-06-29) |
F [auth M] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
N [auth W] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
V [auth X] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
G [auth S] | SCOP2B Superfamily | SNARE-like | 8082711 | 3001113 | SCOP2B (2022-06-29) |
O [auth a] | SCOP2B Superfamily | SNARE-like | 8082711 | 3001113 | SCOP2B (2022-06-29) |
W [auth b] | SCOP2B Superfamily | SNARE-like | 8082711 | 3001113 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
H [auth N] | F-protein | e6criN1 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: F-protein | ECOD (1.6) |
P [auth Y] | F-protein | e6criY1 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: F-protein | ECOD (1.6) |
X [auth Z] | F-protein | e6criZ1 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: F-protein | ECOD (1.6) |
B | Adaptin_N | e6criB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
J [auth I] | Adaptin_N | e6criI1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
R [auth J] | Adaptin_N | e6criJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
C | Ras | e6criC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
E [auth H] | Ras | e6criH1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
K | Ras | e6criK1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
M [auth U] | Ras | e6criU1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
S [auth L] | Ras | e6criL1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
U [auth V] | Ras | e6criV1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D [auth G] | Adaptin_N | e6criG1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
L [auth Q] | Adaptin_N | e6criQ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
T [auth R] | Adaptin_N | e6criR1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
F [auth M] | Adap_comp_sub_2nd | e6criM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
F [auth M] | Adap_comp_sub_2nd,Adap_comp_sub_1st | e6criM3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd,Adap_comp_sub_1st | ECOD (1.6) |
F [auth M] | Clat_adaptor_s | e6criM2 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
N [auth W] | Adap_comp_sub_2nd | e6criW2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
N [auth W] | Adap_comp_sub_2nd,Adap_comp_sub_1st | e6criW3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd,Adap_comp_sub_1st | ECOD (1.6) |
N [auth W] | Clat_adaptor_s | e6criW1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
V [auth X] | Adap_comp_sub_2nd | e6criX3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
V [auth X] | Adap_comp_sub_2nd,Adap_comp_sub_1st | e6criX2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd,Adap_comp_sub_1st | ECOD (1.6) |
V [auth X] | Clat_adaptor_s | e6criX1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
G [auth S] | Clat_adaptor_s | e6criS1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
O [auth a] | Clat_adaptor_s | e6cria1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
W [auth b] | Clat_adaptor_s | e6crib1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00469 | Negative factor, (F-Protein) or Nef (F-protein) | Negative factor, (F-Protein) or Nef | - | Family | |
B, J [auth I], R [auth J] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
PF00025 | ADP-ribosylation factor family (Arf) | ADP-ribosylation factor family | Pfam combines a number of different Prosite families together | Domain | |
D [auth G], L [auth Q], T [auth R] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
F [auth M], N [auth W], V [auth X] | PF00928 | Adaptor complexes medium subunit family (Adap_comp_sub) | Adaptor complexes medium subunit family | - | Family |
G [auth S], O [auth a], W [auth b] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |