5YMR
The Crystal Structure of IseG
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d5ymrb_ | Alpha and beta proteins (a/b) | PFL-like glycyl radical enzymes | PFL-like glycyl radical enzymes | automated matches | automated matches | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
B [auth D] | d5ymrd_ | Alpha and beta proteins (a/b) | PFL-like glycyl radical enzymes | PFL-like glycyl radical enzymes | automated matches | automated matches | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
C | d5ymrc_ | Alpha and beta proteins (a/b) | PFL-like glycyl radical enzymes | PFL-like glycyl radical enzymes | automated matches | automated matches | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
D [auth A] | d5ymra_ | Alpha and beta proteins (a/b) | PFL-like glycyl radical enzymes | PFL-like glycyl radical enzymes | automated matches | automated matches | (Nitratidesulfovibrio vulgaris str. Hildenborough ) [TaxId: 882 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8099882 | 3001069 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8099882 | 3001069 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8099882 | 3001069 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2 Family | PFL-like | 8099881 | 4003576 | SCOP2 (2022-06-29) |
D [auth A] | SCOP2 Superfamily | PFL-like glycyl radical enzymes | 8099882 | 3001069 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF01228,PF02901 | e5ymrB1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: PF01228,PF02901 | ECOD (1.6) |
A [auth B] | PF01228 | e5ymrB2 | A: extended segments | X: Glycyl radical domain (From Topology) | H: Glycyl radical domain (From Topology) | T: Glycyl radical domain | F: PF01228 | ECOD (1.6) |
B [auth D] | PF01228,PF02901 | e5ymrD1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: PF01228,PF02901 | ECOD (1.6) |
B [auth D] | PF01228 | e5ymrD2 | A: extended segments | X: Glycyl radical domain (From Topology) | H: Glycyl radical domain (From Topology) | T: Glycyl radical domain | F: PF01228 | ECOD (1.6) |
C | PF01228,PF02901 | e5ymrC1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: PF01228,PF02901 | ECOD (1.6) |
C | PF01228 | e5ymrC2 | A: extended segments | X: Glycyl radical domain (From Topology) | H: Glycyl radical domain (From Topology) | T: Glycyl radical domain | F: PF01228 | ECOD (1.6) |
D [auth A] | PF01228,PF02901 | e5ymrA1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: PF01228,PF02901 | ECOD (1.6) |
D [auth A] | PF01228 | e5ymrA2 | A: extended segments | X: Glycyl radical domain (From Topology) | H: Glycyl radical domain (From Topology) | T: Glycyl radical domain | F: PF01228 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.20.70.20 | Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | CATH (4.3.0) | |
B [auth D] | 3.20.70.20 | Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | CATH (4.3.0) | |
C | 3.20.70.20 | Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | CATH (4.3.0) | |
D [auth A] | 3.20.70.20 | Alpha Beta | Alpha-Beta Barrel | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth D], C, D [auth A] | PF01228 | Glycine radical (Gly_radical) | Glycine radical | - | Domain |
A [auth B], B [auth D], C, D [auth A] | PF02901 | Pyruvate formate lyase-like (PFL-like) | Pyruvate formate lyase-like | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth D], C, D [auth A] | IPR004184 | Pyruvate formate lyase domain | Domain |
A [auth B], B [auth D], C, D [auth A] | IPR001150 | Glycine radical domain | Domain |
A [auth B], B [auth D], C, D [auth A] | IPR019777 | Formate C-acetyltransferase glycine radical, conserved site | Conserved Site |