5YKN
crystal structure of Arabidopsis thaliana JMJ14 catalytic domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02373,PF02375 | e5yknA2 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02373,PF02375 | ECOD (1.6) |
A | PF02928 | e5yknA1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF02928 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02928 | C5HC2 zinc finger (zf-C5HC2) | C5HC2 zinc finger | Predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [1]. This domain may have a DNA binding function. | Domain | |
PF02373 | JmjC domain, hydroxylase (JmjC) | JmjC domain, hydroxylase | The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ... | Domain | |
PF02375 | jmjN domain (JmjN) | jmjN domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003347 | JmjC domain | Domain | |
IPR003349 | JmjN domain | Domain | |
IPR003889 | FY-rich, C-terminal | Conserved Site | |
IPR004198 | Zinc finger, C5HC2-type | Domain | |
IPR003888 | FY-rich, N-terminal | Conserved Site |