5YIM
Structure of a Legionella effector
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5yimA3 | A: alpha bundles | X: Spectrin repeat-like | H: Legionella effector SdeA 3-helical bundle (From Topology) | T: Legionella effector SdeA 3-helical bundle | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e5yimA2 | A: alpha bundles | X: Effector SdeA helical domain (From Topology) | H: Effector SdeA helical domain (From Topology) | T: Effector SdeA helical domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF12252 | e5yimA1 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: PF12252 | ECOD (1.6) |
A | PF19048 | e5yimA4 | A: a+b complex topology | X: ADP-ribosylation (From Topology) | H: ADP-ribosylation (From Topology) | T: ADP-ribosylation | F: PF19048 | ECOD (1.6) |
B [auth C] | F_UNCLASSIFIED | e5yimC1 | A: alpha bundles | X: Spectrin repeat-like | H: Legionella effector SdeA 3-helical bundle (From Topology) | T: Legionella effector SdeA 3-helical bundle | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth C] | F_UNCLASSIFIED | e5yimC2 | A: alpha bundles | X: Effector SdeA helical domain (From Topology) | H: Effector SdeA helical domain (From Topology) | T: Effector SdeA helical domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth C] | PF12252 | e5yimC3 | A: alpha complex topology | X: PDEase-like | H: HD-domain/PDEase-like (From Topology) | T: HD-domain/PDEase-like | F: PF12252 | ECOD (1.6) |
B [auth C] | PF19048 | e5yimC4 | A: a+b complex topology | X: ADP-ribosylation (From Topology) | H: ADP-ribosylation (From Topology) | T: ADP-ribosylation | F: PF19048 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF19048 | SidE mono-ADP-ribosyltransferase domain (SidE_mART) | SidE mono-ADP-ribosyltransferase domain | This domain found in the SidE bacterial effector protein mediates the mono-ADP-ribosylation of ubiquitin, which is then ligated to host proteins by the Pfam:PF12252 domain [1]. | Domain |
A, B [auth C] | PF12252 | SidE phosphodiesterase (PDE) domain (SidE_PDE) | SidE phosphodiesterase (PDE) domain | This entry represents the phosphodiesterase (PDE) domain found in the bacterial ubiquitinating enzymes, which belong to the SidE family. This domain catalyses the conjugation of ADP-ribosylated ubiquitin (ADPR-Ub), previously synthesised by the mono- ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth C] | SdeA | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C] | IPR043935 | SidE, mono-ADP-ribosyltransferase domain | Domain |
A, B [auth C] | IPR021014 | SidE, PDE domain | Domain |
A, B [auth C] | IPR043934 | SidE, DUB domain | Domain |