5YDP
Crystal Structure of TetR Family Repressor AlkX from Dietzia sp. Strain DQ12-45-1b Implicated in Biodegradation of n-Alkanes
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00440 | e5ydpA2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF00440 | ECOD (1.6) |
A | PF18556 | e5ydpA1 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: PF18556 | ECOD (1.6) |
B | PF00440 | e5ydpB2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF00440 | ECOD (1.6) |
B | PF18556 | e5ydpB1 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: PF18556 | ECOD (1.6) |
C | PF00440 | e5ydpC2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF00440 | ECOD (1.6) |
C | PF18556 | e5ydpC1 | A: alpha bundles | X: Tetracyclin repressor-like, C-terminal domain (From Topology) | H: Tetracyclin repressor-like, C-terminal domain (From Topology) | T: Tetracyclin repressor-like, C-terminal domain | F: PF18556 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00440 | Bacterial regulatory proteins, tetR family (TetR_N) | Bacterial regulatory proteins, tetR family | - | Domain | |
PF18556 | Bacterial Tetracyclin repressor, C-terminal domain (TetR_C_35) | Bacterial Tetracyclin repressor, C-terminal domain | This is the C-terminal tetracyclin repressor domain found in bacteria. Family members include TetR family transcriptional regulators Rv3249c and Rv1816 found in Mycobacterium tuberculosis. Palmitic acid (a fatty acid) and isopropyl laurate (a fatty a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001647 | DNA-binding HTH domain, TetR-type | Domain | |
IPR040611 | HTH-type transcriptional regulator AlkX, C-terminal, Actinobacteria | Domain | |
IPR009057 | Homeobox-like domain superfamily | Homologous Superfamily |