Annotations: 5Y53

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF12165	e5y53A1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: PAL domain of ALFIN-like (AL) protein (From Topology)	T: PAL domain of ALFIN-like (AL) protein	F: PF12165	ECOD (1.6)
B	PF12165	e5y53B1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: PAL domain of ALFIN-like (AL) protein (From Topology)	T: PAL domain of ALFIN-like (AL) protein	F: PF12165	ECOD (1.6)
D [auth C]	PF12165	e5y53C1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: PAL domain of ALFIN-like (AL) protein (From Topology)	T: PAL domain of ALFIN-like (AL) protein	F: PF12165	ECOD (1.6)
E	PF12165	e5y53E1	A: a+b two layers	X: RRF/tRNA synthetase additional domain-like	H: PAL domain of ALFIN-like (AL) protein (From Topology)	T: PAL domain of ALFIN-like (AL) protein	F: PF12165	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D [auth C], E	PF12165	Alfin (Alfin)	Alfin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, D [auth C], E	PHD finger protein ALFIN-LIKE 2	protein binding binding histone binding cation binding ion binding metal ion binding small molecule binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process cellular process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
C [auth D], F	AtBMI1b binding site	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding ion binding binding metal ion binding small molecule binding	response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation response to inorganic substance organonitrogen compound metabolic process protein autoubiquitination primary metabolic process organic substance metabolic process protein ubiquitination response to acid chemical response to stimulus response to stress response to chemical response to oxygen-containing compound response to abiotic stimulus response to water response to water deprivation response to inorganic substance organonitrogen compound metabolic process protein autoubiquitination primary metabolic process organic substance metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, D [auth C], E	IPR001965	Zinc finger, PHD-type	Domain
A, B, D [auth C], E	IPR045104	Alfin	Family
A, B, D [auth C], E	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B, D [auth C], E	IPR019787	Zinc finger, PHD-finger	Domain
A, B, D [auth C], E	IPR044104	Alfin1-like, PHD finger	Domain
A, B, D [auth C], E	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B, D [auth C], E	IPR021998	Alfin, N-terminal	Domain
A, B, D [auth C], E	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
C [auth D], F	IPR044807	E3 ubiquitin protein ligase DRIP1-like	Family
C [auth D], F	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
C [auth D], F	IPR044768	DRIP1/2, RAWUL domain	Domain
C [auth D], F	IPR001841	Zinc finger, RING-type	Domain
C [auth D], F	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.